INSL4 Pseudogenes Help Define the Relaxin Family Repertoire in the Common Ancestor of Placental Mammals

被引:8
作者
Ignacio Arroyo, Jose [1 ]
Hoffmann, Federico G. [2 ,3 ]
Good, Sara [4 ]
Opazo, Juan C. [1 ]
机构
[1] Univ Austral Chile, Fac Ciencias, Inst Ciencias Ambientales & Evolut, Valdivia, Chile
[2] Mississippi State Univ, Dept Biochem Mol Biol Entomol & Plant Pathol, Starkville, MS USA
[3] Mississippi State Univ, Inst Genom Biocomp & Biotechnol, Starkville, MS USA
[4] Univ Winnipeg, Dept Biol, Winnipeg, MB R3B 2E9, Canada
基金
美国国家科学基金会;
关键词
INSL4; Placentin; Differential retention; Gene family evolution; Mammals; Gene duplication; PHYSIOLOGICAL ROLES; GENE; EXPRESSION; SEQUENCES; EVOLUTION; PEPTIDES; PROTEIN;
D O I
10.1007/s00239-012-9517-0
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The relaxin/insulin-like (RLN/INSL) gene family comprises a group of signaling molecules that perform physiological roles related mostly to reproduction and neuroendocrine regulation. They are found on three different locations in the mammalian genome, which have been called relaxin family locus (RFL) A, B, and C. Early in placental mammalian evolution, the ancestral proto-RLN gene at the RFLB locus underwent successive rounds of small-scale duplications resulting in variable number of paralogous genes in different placental lineages. Most placental mammals harbor copies of the RLN2 and INSL6 paralogs in the RFLB. However, the origin of an additional paralog, INSL4 (also known as placentin), has been controversial as its phyletic distribution does not converge with its phylogenetic position. In principle, by searching for INSL4 genes in representative species of all major groups of mammals we can gain insights into when the gene originated and better reconstruct its evolutionary history. Here we identified INSL4 pseudogenes in two laurasiatherian, (alpaca and dolphin) and one xenarthran (armadillo) species. Phylogenetic and synteny analyses confirmed that the identified pseudogenes are orthologs of INSL4. According to these results, the proto-RLN gene in the RFLB underwent two successive tandem duplications which gave rise the INSL6 and INSL4 paralogs in the last common ancestor of placental mammals. The INSL4 gene was subsequently inactivated or lost from the genome in all placentals other than catarrhine primates, where its product became functionally relevant. Our results highlight the contribution of relatively old gene duplicates to the gene complement of extant species.
引用
收藏
页码:73 / 78
页数:6
相关论文
共 22 条
[1]   Relaxin: new peptides, receptors and novel actions [J].
Bathgate, RAD ;
Samuel, CS ;
Burazin, TCD ;
Gundlach, AL ;
Tregear, GW .
TRENDS IN ENDOCRINOLOGY AND METABOLISM, 2003, 14 (05) :207-213
[2]   Placenta-specific INSL4 expression is mediated by a human endogenous retrovirus element [J].
Bièche, I ;
Laurent, A ;
Laurendeau, I ;
Duret, L ;
Giovangrandi, Y ;
Frendo, JL ;
Olivi, M ;
Fausser, JL ;
Evain-Brion, D ;
Vidaud, M .
BIOLOGY OF REPRODUCTION, 2003, 68 (04) :1422-1429
[3]   Mammalian Evolution May not Be Strictly Bifurcating [J].
Hallstrom, Bjorn M. ;
Janke, Axel .
MOLECULAR BIOLOGY AND EVOLUTION, 2010, 27 (12) :2804-2816
[4]   Evolution of the Relaxin/Insulin-like Gene Family in Placental Mammals: Implications for Its Early Evolution [J].
Hoffmann, Federico G. ;
Opazo, Juan C. .
JOURNAL OF MOLECULAR EVOLUTION, 2011, 72 (01) :72-79
[5]   Gene turnover and differential retention in the relaxin/insulin-like gene family in primates [J].
Ignacio Arroyo, Jose ;
Hoffmann, Federico G. ;
Opazo, Juan C. .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2012, 63 (03) :768-776
[6]   Gene Duplication and Positive Selection Explains Unusual Physiological Roles of the Relaxin Gene in the European Rabbit [J].
Ignacio Arroyo, Jose ;
Hoffmann, Federico G. ;
Opazo, Juan C. .
JOURNAL OF MOLECULAR EVOLUTION, 2012, 74 (1-2) :52-60
[7]   RETRACTED: TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics - art. no. 18 (Retracted article. See vol. 15, 243, 2015) [J].
Jobb, G ;
von Haeseler, A ;
Strimmer, K .
BMC EVOLUTIONARY BIOLOGY, 2004, 4 (1)
[8]  
Katoh K, 2009, METHODS MOL BIOL, V537, P39, DOI 10.1007/978-1-59745-251-9_3
[9]   TimeTree2: species divergence times on the iPhone [J].
Kumar, Sudhir ;
Hedges, S. Blair .
BIOINFORMATICS, 2011, 27 (14) :2023-2024
[10]  
Laurent A, 1998, MOL REPROD DEV, V51, P123, DOI 10.1002/(SICI)1098-2795(199810)51:2<123::AID-MRD1>3.3.CO