tRNA concentration fine tunes protein solubility

被引:61
作者
Fedyunin, Ivan [1 ,2 ]
Lehnhardt, Lothar [1 ]
Boehmer, Nadine [1 ]
Kaufmann, Paul [1 ]
Zhang, Gong [1 ]
Ignatova, Zoya [1 ]
机构
[1] Univ Potsdam, Inst Biochem & Biol, D-14476 Potsdam, Germany
[2] Max Planck Inst Colloids & Interfaces, IMPRS Grad Sch, D-14424 Potsdam, Germany
关键词
Protein translation; Protein misfolding; tRNA; E; coli; ESCHERICHIA-COLI; CODON USAGE; TRANSLATIONAL ELONGATION; NASCENT POLYPEPTIDE; TRIGGER FACTOR; RIBOSOME; GENOME; BIAS; DETERMINANTS; ATTENUATION;
D O I
10.1016/j.febslet.2012.07.012
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Clusters of codons pairing to low-abundance tRNAs synchronize the translation with co-translational folding of single domains in multidomain proteins. Although proven with some examples, the impact of the ribosomal speed on the folding and solubility on a global, cell-wide level remains elusive. Here we show that upregulation of three low-abundance tRNAs in Escherichia coli increased the aggregation propensity of several cellular proteins as a result of an accelerated elongation rate. Intriguingly, alterations in the concentration of the natural tRNA pool compromised the solubility of various chaperones consequently rendering the solubility of some chaperone-dependent proteins. (C) 2012 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.
引用
收藏
页码:3336 / 3340
页数:5
相关论文
共 35 条
[1]   Halting a cellular production line: responses to ribosomal pausing during translation [J].
Buchan, J. Ross ;
Stansfield, Ian .
BIOLOGY OF THE CELL, 2007, 99 (09) :475-487
[2]   tRNA properties help shape codon pair preferences in open reading frames [J].
Buchan, JR ;
Aucott, LS ;
Stansfield, I .
NUCLEIC ACIDS RESEARCH, 2006, 34 (03) :1015-1027
[3]   COEVOLUTION OF CODON USAGE AND TRANSFER-RNA ABUNDANCE [J].
BULMER, M .
NATURE, 1987, 325 (6106) :728-730
[4]   New chromatographic and biochemical strategies for quick preparative isolation of tRNA [J].
Cayama, Edmundo ;
Yepez, Antonio ;
Rotondo, Fernando ;
Bandeira, Eduardo ;
Ferreras, Ana C. ;
Triana-Alonso, Francisco J. .
NUCLEIC ACIDS RESEARCH, 2000, 28 (12)
[5]   Virus attenuation by genome-scale changes in codon pair bias [J].
Coleman, J. Robert ;
Papamichail, Dimitris ;
Skiena, Steven ;
Futcher, Bruce ;
Wimmer, Eckard ;
Mueller, Steffen .
SCIENCE, 2008, 320 (5884) :1784-1787
[6]   Trigger Factor and DnaK possess overlapping substrate pools and binding specificities [J].
Deuerling, E ;
Patzelt, H ;
Vorderwülbecke, S ;
Rauch, T ;
Kramer, G ;
Schaffitzel, E ;
Mogk, A ;
Schulze-Specking, A ;
Langen, H ;
Bukau, B .
MOLECULAR MICROBIOLOGY, 2003, 47 (05) :1317-1328
[7]   Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates [J].
Dong, HJ ;
Nilsson, L ;
Kurland, CG .
JOURNAL OF MOLECULAR BIOLOGY, 1996, 260 (05) :649-663
[8]   Selective charging of tRNA isoacceptors explains patterns of codon usage [J].
Elf, J ;
Nilsson, D ;
Tenson, T ;
Ehrenberg, M .
SCIENCE, 2003, 300 (5626) :1718-1722
[9]   PREPARATION OF NUCLEOTIDE-FREE ELONGATION-FACTOR TU AND ITS STABILIZATION BY THE ANTIBIOTIC KIRROMYCIN [J].
FASANO, O ;
CRECHET, JB ;
PARMEGGIANI, A .
ANALYTICAL BIOCHEMISTRY, 1982, 124 (01) :53-58
[10]   Determinants of translation efficiency and accuracy [J].
Gingold, Hila ;
Pilpel, Yitzhak .
MOLECULAR SYSTEMS BIOLOGY, 2011, 7