An effective protocol for plant regeneration from hairy root (HR) via indirect somatic embryogenesis was established in medicinal plant Salvia miltiorrhiza. On the MS medium with 1.0 mgl(-1) 2, 4-dichlorophenoxyacetic (2,4-D) and 0.5 mgl(-1) 6-benzylaminopurine (6-BA), the hairy root explants produced embryogenic callus. After transferred to the MS medium with 0.05 mgl(-1) alpha-naphthylacetic acid (NAA) and 0.5 mgl(-1) 6-BA, the embryogenic callus produced cotyledonary somatic embryo and developed into plantlets. PCR analyses revealed plants regenerated from HRs (HR-plants) retained rolA, B, C and D genes. Morphologically, HR-plants displayed wrinkled leaves, longer and thickened taproots. The biomass of roots and shoots of HR-plants increased by 2.7- and 1.5-fold, respectively, and the total content of tanshinones in their roots raised by 79.5%, in comparison with wild type (WT)-plants. The gene expression of 3-hydroxy-3-methylglutaryl CoA redutase (HMGR) and 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR), the first two key enzymes in the pathway of tanshinone synthesis, was up-regulated in roots of HR-plants. This study offers an effective breeding method and material for producing tanshinones. (C) 2013 Elsevier B.V. All rights reserved.