CircRNAs Are Here to Stay: A Perspective on the MLL Recombinome

被引:18
作者
Dal Molin, Anna [1 ]
Bresolin, Silvia [2 ]
Gaffo, Enrico [2 ]
Tretti, Caterina [2 ]
Boldrin, Elena [3 ]
Meyer, Lueder H. [3 ]
Guglielmelli, Paola [4 ]
Vannucchi, Alessandro M. [4 ]
te Kronnie, Geertruij [2 ]
Bortoluzzi, Stefania [1 ]
机构
[1] Univ Padua, Dept Mol Med, Padua, Italy
[2] Univ Padua, Dept Womens & Childrens Hlth, Padua, Italy
[3] Ulm Univ, Med Ctr, Dept Pediat & Adolescent Med, Ulm, Germany
[4] Univ Florence, AOU Careggi, Ctr Res & Innovat Myeloproliferat Neoplasms, Dept Expt & Clin Med,CRIMM, Florence, Italy
关键词
circRNA; leukemia; MLL rearrangements; fusion-circRNA; translocation breakpoint region; blood cells; CIRCULAR RNAS; LEUKEMIA; PROTEIN; TRANSLATION; COMPLEXES; ABUNDANT;
D O I
10.3389/fgene.2019.00088
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Chromosomal translocations harbored by cancer genomes are important oncogenic drivers. In MLL rearranged acute leukemia (MLLre) MLL/KMT2A fuses with over 90 partner genes. Mechanistic studies provided clues of MLL fusion protein leukemogenic potential, but models failed to fully recapitulate the disease. Recently, expression of oncogenic fusion circular RNAs (f-circ) by MLL-AF9 fusion was proven. This discovery, together with emerging data on the importance and diversity of circRNAs formed the incentive to study the circRNAs of the MLL recombinome. Through interactions with other RNAs, such as microRNAs, and with proteins, circRNAs regulate cellular processes also related to cancer development. CircRNAs can translate into functional peptides too. MLL and most of the 90 MLL translocation partners do express circRNAs and exploration of our RNA-seq dataset of sorted blood cell populations provided new data on alternative circular isoform generation and expression variability of circRNAs of the MLL recombinome. Further, we provided evidence that rearrangements of MLL and three of the main translocation partner genes can impact circRNA expression, supported also by preliminary observations in leukemic cells. The emerging picture underpins the view that circRNAs are worthwhile to be considered when studying MLLre leukemias and provides a new perspective on the impact of chromosomal translocations in cancer cells at large.
引用
收藏
页数:8
相关论文
共 33 条
[1]   Molecular mechanisms of leukemogenesis mediated by MLL fusion proteins [J].
Ayton, PM ;
Cleary, ML .
ONCOGENE, 2001, 20 (40) :5695-5707
[2]   Chromosomal Translocation Formation Is Sufficient to Produce Fusion Circular RNAs Specific to Patient Tumor Cells [J].
Babin, Loelia ;
Piganeau, Marion ;
Renouf, Benjamin ;
Lamribet, Khadija ;
Thirant, Cecile ;
Deriano, Ludovic ;
Mercher, Thomas ;
Giovannangeli, Carine ;
Brunet, Erika C. .
ISCIENCE, 2018, 5 :19-+
[3]   CircRNAs in hematopoiesis and hematological malignancies [J].
Bonizzato, A. ;
Gaffo, E. ;
te Kronnie, G. ;
Bortoluzzi, S. .
BLOOD CANCER JOURNAL, 2016, 6 :e483-e483
[4]   MLL2, Not MLL1, Plays a Major Role in Sustaining MLL-Rearranged Acute Myeloid Leukemia [J].
Chen, Yufei ;
Anastassiadis, Konstantinos ;
Kranz, Andrea ;
Stewart, A. Francis ;
Arndt, Kathrin ;
Waskow, Claudia ;
Yokoyama, Akihiko ;
Jones, Kenneth ;
Neff, Tobias ;
Lee, Yoo ;
Ernst, Patricia .
CANCER CELL, 2017, 31 (06) :755-+
[5]   The RNA Binding Protein Quaking Regulates Formation of circRNAs [J].
Conn, Simon J. ;
Pillman, Katherine A. ;
Toubia, John ;
Conn, Vanessa M. ;
Salmanidis, Marika ;
Phillips, Caroline A. ;
Roslan, Suraya ;
Schreiber, Andreas W. ;
Gregory, Philip A. ;
Goodall, Gregory J. .
CELL, 2015, 160 (06) :1125-1134
[6]   Effect of polymorphisms in folate-related genes on in vitro methotrexate sensitivity in pediatric acute lymphoblastic leukemia [J].
de Jonge, R ;
Hooijberg, JH ;
van Zelst, BD ;
Jansen, G ;
van Zantwijk, CH ;
Kaspers, GJL ;
Peters, FGJ ;
Ravindranath, Y ;
Pieters, R ;
Lindemans, J .
BLOOD, 2005, 106 (02) :717-720
[7]   The silent mutational landscape of infant MLL-AF4 pro-B acute lymphoblastic leukemia [J].
Dobbins, Sara E. ;
Sherborne, Amy L. ;
Ma, Yussanne P. ;
Bardini, Michela ;
Biondi, Andrea ;
Cazzaniga, Giovanni ;
Lloyd, Amy ;
Chubb, Daniel ;
Greaves, Mel F. ;
Houlston, Richard S. .
GENES CHROMOSOMES & CANCER, 2013, 52 (10) :954-960
[8]   Foxo3 circular RNA retards cell cycle progression via forming ternary complexes with p21 and CDK2 [J].
Du, William W. ;
Yang, Weining ;
Liu, Elizabeth ;
Yang, Zhenguo ;
Dhaliwal, Preet ;
Yang, Burton B. .
NUCLEIC ACIDS RESEARCH, 2016, 44 (06) :2846-2858
[9]  
Gaffo Enrico, 2017, Non-Coding RNA, V3, P8, DOI 10.3390/ncrna3010008
[10]   Oncogenic Role of Fusion-circRNAs Derived from Cancer-Associated Chromosomal Translocations [J].
Guarnerio, Jlenia ;
Bezzi, Marco ;
Jeong, Jong Cheol ;
Paffenholz, Stella V. ;
Berry, Kelsey ;
Naldini, Matteo M. ;
Lo-Coco, Francesco ;
Tay, Yvonne ;
Beck, Andrew H. ;
Pandolfi, Pier Paolo .
CELL, 2016, 165 (02) :289-302