Somatic mutation of CDKN1B in small intestine neuroendocrine tumors

被引:250
作者
Francis, Joshua M. [1 ,2 ]
Kiezun, Adam [1 ]
Ramos, Alex H. [1 ,2 ]
Serra, Stefano [3 ]
Pedamallu, Chandra Sekhar [1 ,2 ]
Qian, Zhi Rong [2 ]
Banck, Michaela S. [4 ,5 ]
Kanwar, Rahul [4 ]
Kulkarni, Amit A. [4 ]
Karpathakis, Anna [6 ,7 ]
Manzo, Veronica [2 ]
Contractor, Tanupriya [8 ]
Philips, Juliet [2 ]
Nickerson, Elizabeth [1 ]
Nam Pho [1 ]
Hooshmand, Susanne M. [2 ]
Brais, Lauren K. [2 ]
Lawrence, Michael S. [1 ]
Pugh, Trevor [1 ]
McKenna, Aaron [1 ]
Sivachenko, Andrey [1 ]
Cibulskis, Kristian [1 ]
Carter, Scott L. [1 ]
Ojesina, Akinyemi I. [1 ,2 ]
Freeman, Samuel [2 ]
Jones, Robert T. [9 ]
Voet, Douglas [1 ]
Saksena, Gordon [1 ]
Auclair, Daniel [1 ]
Onofrio, Robert [1 ]
Shefler, Erica [1 ]
Sougnez, Carrie [1 ]
Grimsby, Jonna [1 ]
Green, Lisa [1 ]
Lennon, Niall [1 ]
Meyer, Tim [6 ,7 ]
Caplin, Martyn [7 ]
Chung, Daniel C. [10 ,11 ]
Beutler, Andreas S. [4 ,5 ]
Ogino, Shuji [2 ,12 ,13 ,14 ]
Thirlwell, Christina [6 ,7 ]
Shivdasani, Ramesh [2 ]
Asa, Sylvia L. [3 ,15 ]
Harris, Chris R. [8 ,16 ,17 ]
Getz, Gad [1 ]
Kulke, Matthew [2 ]
Meyerson, Matthew [1 ,2 ,9 ]
机构
[1] Broad Inst, Cambridge, MA USA
[2] Dana Farber Canc Inst, Dept Med Oncol, Boston, MA 02115 USA
[3] Univ Hlth Network, Dept Pathol, Toronto, ON, Canada
[4] Mayo Clin, Div Med Oncol, Rochester, MN USA
[5] Mayo Clin, Ctr Canc, Rochester, MN USA
[6] UCL, Inst Canc, London, England
[7] Royal Free Hosp, NET Unit, London NW3 2QG, England
[8] Raymond & Beverly Sackler Fdn, New Brunswick, NJ USA
[9] Dana Farber Canc Inst, Ctr Canc Genome Discovery, Boston, MA 02115 USA
[10] Massachusetts Gen Hosp, Gastrointestinal Unit, Boston, MA 02114 USA
[11] Massachusetts Gen Hosp, Ctr Canc, Boston, MA USA
[12] Brigham & Womens Hosp, Dept Pathol, Boston, MA 02115 USA
[13] Harvard Univ, Sch Med, Boston, MA USA
[14] Harvard Univ, Sch Publ Hlth, Dept Epidemiol, Boston, MA 02115 USA
[15] Univ Toronto, Ontario Canc Inst, Toronto, ON M5S 1A1, Canada
[16] Univ Med & Dent New Jersey, Canc Inst New Jersey, New Brunswick, NJ USA
[17] Univ Med & Dent New Jersey, Dept Pediat, New Brunswick, NJ USA
关键词
DEPENDENT KINASE INHIBITOR; P27(KIP1) GENE; BREAST-CANCER; FREQUENT LOSS; MICE LACKING; SUPPRESSOR; GROWTH; HAPLOINSUFFICIENCY; HETEROZYGOSITY; ADENOCARCINOMA;
D O I
10.1038/ng.2821
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The diagnosed incidence of small intestine neuroendocrine tumors (SI-NETs) is increasing, and the underlying genomic mechanisms have not yet been defined. Using exome- and genome-sequence analysis of SI-NETs, we identified recurrent somatic mutations and deletions in CDKN1B, the cyclin-dependent kinase inhibitor gene, which encodes p27. We observed frameshift mutations of CDKN1B in 14 of 180 SI-NETs, and we detected hemizygous deletions encompassing CDKN1B in 7 out of 50 SI-NETs, nominating p27 as a tumor suppressor and implicating cell cycle dysregulation in the etiology of SI-NETs.
引用
收藏
页码:1483 / U110
页数:5
相关论文
共 52 条
  • [11] A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries
    Fisher, Sheila
    Barry, Andrew
    Abreu, Justin
    Minie, Brian
    Nolan, Jillian
    Delorey, Toni M.
    Young, Geneva
    Fennell, Timothy J.
    Allen, Alexander
    Ambrogio, Lauren
    Berlin, Aaron M.
    Blumenstiel, Brendan
    Cibulskis, Kristian
    Friedrich, Dennis
    Johnson, Ryan
    Juhn, Frank
    Reilly, Brian
    Shammas, Ramy
    Stalker, John
    Sykes, Sean M.
    Thompson, Jon
    Walsh, John
    Zimmer, Andrew
    Zwirko, Zac
    Gabriel, Stacey
    Nicol, Robert
    Nusbaum, Chad
    [J]. GENOME BIOLOGY, 2011, 12 (01):
  • [12] A census of human cancer genes
    Futreal, PA
    Coin, L
    Marshall, M
    Down, T
    Hubbard, T
    Wooster, R
    Rahman, N
    Stratton, MR
    [J]. NATURE REVIEWS CANCER, 2004, 4 (03) : 177 - 183
  • [13] A critical role for p27kip1 gene dosage in a mouse model of prostate carcinogenesis
    Gao, H
    Ouyang, X
    Banach-Petrosky, W
    Borowsky, AD
    Yong, L
    Kim, M
    Lee, H
    Shih, WJ
    Cardiff, RD
    Shen, MM
    Abate-Shen, C
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (49) : 17204 - 17209
  • [14] Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing
    Gerlinger, Marco
    Rowan, Andrew J.
    Horswell, Stuart
    Larkin, James
    Endesfelder, David
    Gronroos, Eva
    Martinez, Pierre
    Matthews, Nicholas
    Stewart, Aengus
    Tarpey, Patrick
    Varela, Ignacio
    Phillimore, Benjamin
    Begum, Sharmin
    McDonald, Neil Q.
    Butler, Adam
    Jones, David
    Raine, Keiran
    Latimer, Calli
    Santos, Claudio R.
    Nohadani, Mahrokh
    Eklund, Aron C.
    Spencer-Dene, Bradley
    Clark, Graham
    Pickering, Lisa
    Stamp, Gordon
    Gore, Martin
    Szallasi, Zoltan
    Downward, Julian
    Futreal, P. Andrew
    Swanton, Charles
    [J]. NEW ENGLAND JOURNAL OF MEDICINE, 2012, 366 (10) : 883 - 892
  • [15] Getz G, 2007, SCIENCE, V317, DOI 10.1126/science.1138764
  • [16] Outcome of surgery for ileojejunal neuroendocrine tumors
    Habbe, Nils
    Fendrich, Volker
    Heverhagen, Anna
    Ramaswamy, Annette
    Bartsch, Detlef K.
    [J]. SURGERY TODAY, 2013, 43 (10) : 1168 - 1174
  • [17] Ovarian cancer has frequent loss of heterozygosity at chromosome 112p12.3-13.1 (region of TEL and Kip1 loci) and chromosome 12q23-ter: Evidence for two new tumour-suppressor genes
    Hatta, Y
    Takeuchi, S
    Yokota, J
    Koeffler, HP
    [J]. BRITISH JOURNAL OF CANCER, 1997, 75 (09) : 1256 - 1262
  • [18] Hetet G, 2000, Hematol J, V1, P42, DOI 10.1038/sj.thj.6200008
  • [19] Mapping the Hallmarks of Lung Adenocarcinoma with Massively Parallel Sequencing
    Imielinski, Marcin
    Berger, Alice H.
    Hammerman, Peter S.
    Hernandez, Bryan
    Pugh, Trevor J.
    Hodis, Eran
    Cho, Jeonghee
    Suh, James
    Capelletti, Marzia
    Sivachenko, Andrey
    Sougnez, Carrie
    Auclair, Daniel
    Lawrence, Michael S.
    Stojanov, Petar
    Cibulskis, Kristian
    Choi, Kyusam
    de Waal, Luc
    Sharifnia, Tanaz
    Brooks, Angela
    Greulich, Heidi
    Banerji, Shantanu
    Zander, Thomas
    Seidel, Danila
    Leenders, Frauke
    Ansen, Sascha
    Ludwig, Corinna
    Engel-Riedel, Walburga
    Stoelben, Erich
    Wolf, Juergen
    Goparju, Chandra
    Thompson, Kristin
    Winckler, Wendy
    Kwiatkowski, David
    Johnson, Bruce E.
    Jaenne, Pasi A.
    Miller, Vincent A.
    Pao, William
    Travis, William D.
    Pass, Harvey I.
    Gabriel, Stacey B.
    Lander, Eric S.
    Thomas, Roman K.
    Garraway, Levi A.
    Getz, Gad
    Meyerson, Matthew
    [J]. CELL, 2012, 150 (06) : 1107 - 1120
  • [20] DAXX/ATRX, MEN1, and mTOR Pathway Genes Are Frequently Altered in Pancreatic Neuroendocrine Tumors
    Jiao, Yuchen
    Shi, Chanjuan
    Edil, Barish H.
    de Wilde, Roeland F.
    Klimstra, David S.
    Maitra, Anirban
    Schulick, Richard D.
    Tang, Laura H.
    Wolfgang, Christopher L.
    Choti, Michael A.
    Velculescu, Victor E.
    Diaz, Luis A., Jr.
    Vogelstein, Bert
    Kinzler, Kenneth W.
    Hruban, Ralph H.
    Papadopoulos, Nickolas
    [J]. SCIENCE, 2011, 331 (6021) : 1199 - 1203