Zaccai neutron resilience and site-specific hydration dynamics in a globular protein

被引:6
作者
Miao, Yinglong [1 ,2 ]
Hong, Liang [1 ,2 ]
Yi, Zheng [1 ,2 ]
Smith, Jeremy C. [1 ,2 ]
机构
[1] Univ Tennessee, Oak Ridge Natl Lab, Ctr Biophys Mol, Oak Ridge, TN 37831 USA
[2] Univ Tennessee, Dept Biochem & Cellular & Mol Biol, Knoxville, TN 37996 USA
基金
美国能源部;
关键词
PANCREATIC TRYPSIN-INHIBITOR; SCATTERING ANALYSIS; MOLECULAR-DYNAMICS; CYTOCHROME P450CAM; BACTERIORHODOPSIN; TEMPERATURE; SIMULATION; MYOGLOBIN; FLEXIBILITY; TRANSITION;
D O I
10.1140/epje/i2013-13072-5
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A discussion is presented of contributions of the Zaccai group to the understanding of flexibility in biological macromolecules using dynamic neutron scattering. The concept of resilience as introduced by Zaccai is discussed and investigated using molecular dynamics simulation on camphor-bound cytochrome P450. The resilience of hydrophilic residues is found to be more strongly affected by hydration than that of hydrophobic counterparts. The hydration-induced softening of protein propagates from the surface into the dry core. Moreover, buried hydrophilic residues behave more like those exposed on the protein surface, and are different from their hydrophobic counterparts.
引用
收藏
页数:6
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共 30 条
  • [1] Energy resolution and dynamical heterogeneity effects on elastic incoherent neutron scattering from molecular systems
    Becker, T
    Smith, JC
    [J]. PHYSICAL REVIEW E, 2003, 67 (02): : 8 - 219048
  • [2] Protein flexibility from the dynamical transition: A force constant analysis
    Bicout, DJ
    Zaccai, G
    [J]. BIOPHYSICAL JOURNAL, 2001, 80 (03) : 1115 - 1123
  • [3] Harmonic behavior of trehalose-coated carbon-monoxy-myoglobin at high temperature
    Cordone, L
    Ferrand, M
    Vitrano, E
    Zaccai, G
    [J]. BIOPHYSICAL JOURNAL, 1999, 76 (02) : 1043 - 1047
  • [4] INELASTIC NEUTRON-SCATTERING ANALYSIS OF PICOSECOND INTERNAL PROTEIN DYNAMICS - COMPARISON OF HARMONIC THEORY WITH EXPERIMENT
    CUSACK, S
    SMITH, J
    FINNEY, J
    TIDOR, B
    KARPLUS, M
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1988, 202 (04) : 903 - 908
  • [5] DYNAMICAL TRANSITION OF MYOGLOBIN REVEALED BY INELASTIC NEUTRON-SCATTERING
    DOSTER, W
    CUSACK, S
    PETRY, W
    [J]. NATURE, 1989, 337 (6209) : 754 - 756
  • [6] Engelman A. J. D. D. M., 1984, BASIC LIFE SCI, V27, P365
  • [7] A SMOOTH PARTICLE MESH EWALD METHOD
    ESSMANN, U
    PERERA, L
    BERKOWITZ, ML
    DARDEN, T
    LEE, H
    PEDERSEN, LG
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1995, 103 (19) : 8577 - 8593
  • [8] THERMAL MOTIONS AND FUNCTION OF BACTERIORHODOPSIN IN PURPLE MEMBRANES - EFFECTS OF TEMPERATURE AND HYDRATION STUDIED BY NEUTRON-SCATTERING
    FERRAND, M
    DIANOUX, AJ
    PETRY, W
    ZACCAI, G
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1993, 90 (20) : 9668 - 9672
  • [9] Elastic and Conformational Softness of a Globular Protein
    Hong, Liang
    Glass, Dennis C.
    Nickels, Jonathan D.
    Perticaroli, Stefania
    Yi, Zheng
    Madhusudan, Tyagi
    O'Neill, Hugh
    Zhang, Qiu
    Sokolov, Alexei P.
    Smith, Jeremy C.
    [J]. PHYSICAL REVIEW LETTERS, 2013, 110 (02)
  • [10] Surface Hydration Amplifies Single-Well Protein Atom Diffusion Propagating into the Macromolecular Core
    Hong, Liang
    Cheng, Xiaolin
    Glass, Dennis C.
    Smith, Jeremy C.
    [J]. PHYSICAL REVIEW LETTERS, 2012, 108 (23)