Structural insight into poplar glutaredoxin C1 with a bridging iron-sulfur cluster at the active site

被引:84
作者
Feng, Yingang
Zhong, Nan
Rouhier, Nicolas
Hase, Toshiharu
Kusunoki, Masami
Jacquot, Jean-Pierre
Jin, Changwen
Xia, Bin [1 ]
机构
[1] Peking Univ, Beijing Nucl Magnet Resonance Ctr, Beijing 100871, Peoples R China
[2] Peking Univ, Coll Chem & Mol Engn, Beijing 100871, Peoples R China
[3] Peking Univ, Coll Life Sci, Beijing 100871, Peoples R China
[4] Univ Henri Poincare, UMR 1136, INRA, UHP 1136,IFR 110 Genom Ecophys & Ecol Fonct, F-54506 Vandoeuvre Les Nancy, France
[5] Osaka Univ, Inst Prot Res, Res Ctr Struct & Funct Proteom, Suita, Osaka 5650871, Japan
关键词
D O I
10.1021/bi060444t
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Glutaredoxins are glutathione-dependent enzymes that function to reduce disulfide bonds in vivo. Interestingly, a recent discovery indicates that some glutaredoxins can also exist in another form, an iron-sulfur protein [Lillig, C. H., et al. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 8168-8173]. This provides a direct connection between glutaredoxins and iron-sulfur proteins, suggesting a possible new regulatory role of iron-sulfur clusters along with the new functional switch of glutaredoxins. Biochemical studies have indicated that poplar glutaredoxin C1 (Grx-C1) is also such a biform protein. The apo form (monomer) of Grx-C1 is a regular glutaredoxin, and the holo form (dimer) is an iron-sulfur protein with a bridging [2Fe-2S] cluster. Here, we report the structural characterizations of poplar Grx-C1 in both the apo and holo forms by NMR spectroscopy. The solution structure of the reduced apo Grx-C1, which is the first plant Grx structure, shows a typical Grx fold. When poplar Grx-C1 forms a dimer with an iron-sulfur cluster, each subunit of the holo form still retains the overall fold of the apo form. The bridging iron-sulfur cluster in holo Grx-C1 is coordinated near the active site. In addition to the iron-sulfur cluster linker, helix alpha 3 of each subunit is probably involved in the direct contact between the two subunits. Moreover, two glutathione molecules are identified in the vicinity of the iron-sulfur cluster and very likely participate in cluster coordination. Taken together, we propose that the bridging [2Fe-2S] cluster is coordinated by the first cysteine at the glutaredoxin active site from each subunit of holo Grx-C1, along with two cysteines from two glutathione molecules. Our studies reveal that holo Grx-C1 has a novel structural and iron-sulfur cluster coordination pattern for an iron-sulfur protein.
引用
收藏
页码:7998 / 8008
页数:11
相关论文
共 43 条
  • [31] AMBER, A PACKAGE OF COMPUTER-PROGRAMS FOR APPLYING MOLECULAR MECHANICS, NORMAL-MODE ANALYSIS, MOLECULAR-DYNAMICS AND FREE-ENERGY CALCULATIONS TO SIMULATE THE STRUCTURAL AND ENERGETIC PROPERTIES OF MOLECULES
    PEARLMAN, DA
    CASE, DA
    CALDWELL, JW
    ROSS, WS
    CHEATHAM, TE
    DEBOLT, S
    FERGUSON, D
    SEIBEL, G
    KOLLMAN, P
    [J]. COMPUTER PHYSICS COMMUNICATIONS, 1995, 91 (1-3) : 1 - 41
  • [32] Assignment of 1H, 13C, and 15N signals of reduced Clostridium pasteurianum rubredoxin:: Oxidation state-dependent changes in chemical shifts and relaxation rates
    Prantner, AM
    Volkman, BF
    Wilkens, SJ
    Xia, B
    Markley, JL
    [J]. JOURNAL OF BIOMOLECULAR NMR, 1997, 10 (04) : 411 - 412
  • [33] Grx5 is a mitochondrial glutaredoxin required for the activity of iron/sulfur enzymes
    Rodríguez-Manzaneque, MT
    Tamarit, J
    Bellí, G
    Ros, J
    Herrero, E
    [J]. MOLECULAR BIOLOGY OF THE CELL, 2002, 13 (04) : 1109 - 1121
  • [34] Plant glutaredoxins: still mysterious reducing systems
    Rouhier, N
    Gelhaye, E
    Jacquot, JP
    [J]. CELLULAR AND MOLECULAR LIFE SCIENCES, 2004, 61 (11) : 1266 - 1277
  • [35] SWISS-MODEL: an automated protein homology-modeling server
    Schwede, T
    Kopp, J
    Guex, N
    Peitsch, MC
    [J]. NUCLEIC ACIDS RESEARCH, 2003, 31 (13) : 3381 - 3385
  • [36] SODANO P, 1991, J MOL BIOL, V221, P1311
  • [37] The structure of iron-sulfur proteins
    Sticht, H
    Rösch, P
    [J]. PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 1998, 70 (02) : 95 - 136
  • [38] The NMR solution structure of human glutaredoxin in the fully reduced form
    Sun, CH
    Berardi, MJ
    Bushweller, JH
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1998, 280 (04) : 687 - 701
  • [39] Vlamis-Gardikas A, 2002, METHOD ENZYMOL, V347, P286
  • [40] Solution structures of reduced and oxidized bacteriophage T4 glutaredoxin
    Wang, YJ
    Amegbey, G
    Wishart, DS
    [J]. JOURNAL OF BIOMOLECULAR NMR, 2004, 29 (01) : 85 - 90