EXPERIMENTAL AND THEORETICAL STUDIES OF ENZYME-CATALYZED HYDROGEN-TRANSFER REACTIONS

被引:15
作者
Wang, Zhen [1 ]
Roston, Daniel [1 ]
Kohen, Amnon [1 ]
机构
[1] Univ Iowa, Dept Chem, Iowa City, IA 52242 USA
来源
STRUCTURAL AND MECHANISTIC ENZYMOLOGY: BRINGING TOGETHER EXPERIMENTS AND COMPUTING | 2012年 / 87卷
关键词
LIVER ALCOHOL-DEHYDROGENASE; COLI THYMIDYLATE SYNTHASE; DIHYDROFOLATE-REDUCTASE CATALYSIS; STRUCTURE-REACTIVITY CORRELATIONS; PROTON-TRANSFER REACTIONS; HYDRIDE-TRANSFER; TEMPERATURE-DEPENDENCE; COUPLED MOTION; 2'-DEOXYURIDINE 5'-MONOPHOSPHATE; CONFORMATIONAL DYNAMICS;
D O I
10.1016/B978-0-12-398312-1.00006-8
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The mechanisms of enzyme-catalyzed reactions are medicinally important and present a fascinating intellectual challenge. Many experimental and theoretical techniques can shed light on these mechanisms, and here, we shall focus on the utility of kinetic isotope effects (KIEs) to study enzymatic reactions that involve hydrogen transfers. We will provide a short background on the prevailing models to interpret KIEs and then present more detailed reviews of two model enzymes: alcohol dehydrogenase and thymidylate synthase. These two examples provide a context to describe the types of experiments and theoretical calculations that drive this field forward and the kind of information each can furnish. We emphasize the importance of cooperation between experimentalists and theoreticians to continue the progress toward a comprehensive theory of enzyme catalysis.
引用
收藏
页码:155 / 180
页数:26
相关论文
共 89 条
[1]   Catalysis by dihydrofolate reductase and other enzymes arises from electrostatic preorganization, not conformational motions [J].
Adamczyk, Andrew J. ;
Cao, Jie ;
Kamerlin, Shina C. L. ;
Warshel, Arieh .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (34) :14115-14120
[2]   Computational studies of the mechanism for proton and hydride transfer in liver alcohol dehydrogenase [J].
Agarwal, PK ;
Webb, SP ;
Hammes-Schiffer, S .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (19) :4803-4812
[3]   Vibrationally enhanced hydrogen tunneling in the Escherichia coli thymidylate synthase catalyzed reaction [J].
Agrawal, N ;
Hong, BY ;
Mihai, C ;
Kohen, A .
BIOCHEMISTRY, 2004, 43 (07) :1998-2006
[4]   Canonical variational theory for enzyme kinetics with the protein mean force and multidimensional quantum mechanical tunneling dynamics.: Theory and application to liver alcohol dehydrogenase [J].
Alhambra, C ;
Corchado, J ;
Sánchez, ML ;
Garcia-Viloca, M ;
Gao, J ;
Truhlar, DG .
JOURNAL OF PHYSICAL CHEMISTRY B, 2001, 105 (45) :11326-11340
[5]   Quantum dynamics of hydride transfer in enzyme catalysis [J].
Alhambra, C ;
Corchado, JC ;
Sánchez, ML ;
Gao, JL ;
Truhlar, DG .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (34) :8197-8203
[6]   Secondary WT and D/T isotope effects in enzymatic enolization reactions. Coupled motion and tunneling in the triosephosphate isomerase reaction [J].
Alston, WC ;
Kanska, M ;
Murray, CJ .
BIOCHEMISTRY, 1996, 35 (39) :12873-12881
[7]   A link between protein structure and enzyme catalyzed hydrogen tunneling [J].
Bahnson, BJ ;
Colby, TD ;
Chin, JK ;
Goldstein, BM ;
Klinman, JP .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (24) :12797-12802
[8]   UNMASKING OF HYDROGEN TUNNELING IN THE HORSE LIVER ALCOHOL-DEHYDROGENASE REACTION BY SITE-DIRECTED MUTAGENESIS [J].
BAHNSON, BJ ;
PARK, DH ;
KIM, K ;
PLAPP, BV ;
KLINMAN, JP .
BIOCHEMISTRY, 1993, 32 (21) :5503-5507
[9]   Examination of Enzymatic H-Tunneling through Kinetics and Dynamics [J].
Bandaria, Jigar N. ;
Cheatum, Christopher M. ;
Kohen, Amnon .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2009, 131 (29) :10151-10155
[10]   A model for hydride transfer in thymidylate synthase based on unnatural amino acid mutagenesis [J].
Barrett, JE ;
Lucero, CM ;
Schultz, PG .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (34) :7965-7966