Gracilimonas rosea sp nov., isolated from tropical seawater, and emended description of the genus Gracilimonas

被引:16
作者
Cho, Yirang [1 ,2 ]
Chung, Hyunwoo [1 ,2 ]
Jang, Gwang Il [1 ,2 ]
Choi, Dong Han [3 ]
Noh, Jae Hoon [4 ]
Cho, Byung Cheol [1 ,2 ]
机构
[1] Seoul Natl Univ, Sch Earth & Environm Sci, Microbial Oceanog Lab, Seoul 151742, South Korea
[2] Seoul Natl Univ, Res Inst Oceanog, Seoul 151742, South Korea
[3] Korea Inst Ocean Sci & Technol, Marine Biotechnol Res Div, Ansan 426744, South Korea
[4] Korea Inst Ocean Sci & Technol, Marine Ecosyst Res Div, Ansan 426744, South Korea
基金
新加坡国家研究基金会;
关键词
DEOXYRIBONUCLEIC-ACID; BACTERIUM; DATABASE; IDENTIFICATION; PHYLOGENY;
D O I
10.1099/ijs.0.052340-0
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A Gram-staining-negative, non-motile, spore-forming, rod-shaped, marine bacterial strain, CL-KR2(T), was isolated from tropical seawater near Kosrae, an island in the Federated States of Micronesia. Analysis of the 16S rRNA gene sequence of strain CL-KR2(T) revealed a clear affiliation with the genus Gracilimonas. Based on phylogenetic analysis, strain CL-KR2(T) showed the closest phylogenetic relationship to Gracilimonas tropica CL-CB462(T), with 16S rRNA gene sequence similarity of 96.6%. DNA-DNA relatedness between strain CL-KR2(T) and G. tropica CL-CB462(T) was 6.7% (reciprocal 9.5 %). Strain CL-KR2(T) grew in the presence of 1-20% sea salts and the optimal salt concentration was 3.5-5%. The temperature and pH optima for growth were 35 degrees C and pH 7.5. The major cellular fatty acids (>= 10.0%) of strain CL-KR2(T) were iso-C-15:0, summed feature 3 (iso-C-15:0 2-OH and/or C-16:1 omega 7c) and iso-C-17:1 omega 9c and the only isoprenoid quinone was MK-7. The polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, an unidentified phospholipid, two unidentified glycolipids and two unidentified lipids. The genomic DNA G+C content of strain CL-KR2(T) was 43.2 mol%. The combined phenotypic, chemotaxonomic and phylogenetic data showed that strain CL-KR2(T) could be distinguished from the only member of the genus Gracilimonas with a validly published name. Thus, strain CL-KR2(T) should be assigned to a novel species in the genus Gracilimonas, for which the name Gracilimonas rosea sp. nov. is proposed. The type strain is CL-KR2(T) (=KCCM 90206(T)=JCM 18898(T)).
引用
收藏
页码:4006 / 4011
页数:6
相关论文
共 31 条
[11]   DNA-DNA hybridization values and their relationship to whole-genome sequence similarities [J].
Goris, Johan ;
Konstantinidis, Konstantinos T. ;
Klappenbach, Joel A. ;
Coenye, Tom ;
Vandamme, Peter ;
Tiedje, James M. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 :81-91
[12]  
HANSEN GH, 1991, J MICROBIOL METH, V13, P231
[13]   Pedobacter roseus sp nov., isolated from a hypertrophic pond, and emended description of the genus Pedobacter [J].
Hwang, Chung Yeon ;
Choi, Dong Han ;
Cho, Byung Cheol .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2006, 56 :1831-1836
[14]   Pontimonas salivibrio gen. nov., sp nov., a new member of the family Microbacteriaceae isolated from a seawater reservoir of a solar saltern [J].
Jang, Gwang Il ;
Cho, Yirang ;
Cho, Byung Cheol .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2013, 63 :2124-2131
[15]   jPHYDIT: a JAVA']JAVA-based integrated environment for molecular phylogeny of ribosomal RNA sequences [J].
Jeon, YS ;
Chung, HW ;
Park, S ;
Hur, I ;
Lee, JH ;
Chun, J .
BIOINFORMATICS, 2005, 21 (14) :3171-3173
[16]   Nocardioides salarius sp nov., isolated from seawater enriched with zooplankton [J].
Kim, Hye Min ;
Choi, Dong Han ;
Hwang, Chung Yeon ;
Cho, Byung Cheol .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2008, 58 :2056-2064
[17]   Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species [J].
Kim, Ok-Sun ;
Cho, Yong-Joon ;
Lee, Kihyun ;
Yoon, Seok-Hwan ;
Kim, Mincheol ;
Na, Hyunsoo ;
Park, Sang-Cheol ;
Jeon, Yoon Seong ;
Lee, Jae-Hak ;
Yi, Hana ;
Won, Sungho ;
Chun, Jongsik .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2012, 62 :716-721
[18]   Oceanobacillus profundus sp nov., isolated from a deep-sea sediment core [J].
Kim, Yoon-Gon ;
Choi, Dong Han ;
Hyun, Sangmin ;
Cho, Byl Cheol .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 :409-413
[19]  
KOMAGATA K, 1987, METHOD MICROBIOL, V19, P161
[20]  
Lane D.J., 1991, NUCL ACID TECHNIQUES, P177, DOI DOI 10.1002/JOBM.3620310616