Gracilimonas rosea sp nov., isolated from tropical seawater, and emended description of the genus Gracilimonas

被引:16
作者
Cho, Yirang [1 ,2 ]
Chung, Hyunwoo [1 ,2 ]
Jang, Gwang Il [1 ,2 ]
Choi, Dong Han [3 ]
Noh, Jae Hoon [4 ]
Cho, Byung Cheol [1 ,2 ]
机构
[1] Seoul Natl Univ, Sch Earth & Environm Sci, Microbial Oceanog Lab, Seoul 151742, South Korea
[2] Seoul Natl Univ, Res Inst Oceanog, Seoul 151742, South Korea
[3] Korea Inst Ocean Sci & Technol, Marine Biotechnol Res Div, Ansan 426744, South Korea
[4] Korea Inst Ocean Sci & Technol, Marine Ecosyst Res Div, Ansan 426744, South Korea
基金
新加坡国家研究基金会;
关键词
DEOXYRIBONUCLEIC-ACID; BACTERIUM; DATABASE; IDENTIFICATION; PHYLOGENY;
D O I
10.1099/ijs.0.052340-0
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A Gram-staining-negative, non-motile, spore-forming, rod-shaped, marine bacterial strain, CL-KR2(T), was isolated from tropical seawater near Kosrae, an island in the Federated States of Micronesia. Analysis of the 16S rRNA gene sequence of strain CL-KR2(T) revealed a clear affiliation with the genus Gracilimonas. Based on phylogenetic analysis, strain CL-KR2(T) showed the closest phylogenetic relationship to Gracilimonas tropica CL-CB462(T), with 16S rRNA gene sequence similarity of 96.6%. DNA-DNA relatedness between strain CL-KR2(T) and G. tropica CL-CB462(T) was 6.7% (reciprocal 9.5 %). Strain CL-KR2(T) grew in the presence of 1-20% sea salts and the optimal salt concentration was 3.5-5%. The temperature and pH optima for growth were 35 degrees C and pH 7.5. The major cellular fatty acids (>= 10.0%) of strain CL-KR2(T) were iso-C-15:0, summed feature 3 (iso-C-15:0 2-OH and/or C-16:1 omega 7c) and iso-C-17:1 omega 9c and the only isoprenoid quinone was MK-7. The polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, an unidentified phospholipid, two unidentified glycolipids and two unidentified lipids. The genomic DNA G+C content of strain CL-KR2(T) was 43.2 mol%. The combined phenotypic, chemotaxonomic and phylogenetic data showed that strain CL-KR2(T) could be distinguished from the only member of the genus Gracilimonas with a validly published name. Thus, strain CL-KR2(T) should be assigned to a novel species in the genus Gracilimonas, for which the name Gracilimonas rosea sp. nov. is proposed. The type strain is CL-KR2(T) (=KCCM 90206(T)=JCM 18898(T)).
引用
收藏
页码:4006 / 4011
页数:6
相关论文
共 31 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]   The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera [J].
Anzai, Y ;
Kudo, Y ;
Oyaizu, H .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1997, 47 (02) :249-251
[3]   Muricauda ruestringensis gen. nov., sp nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment [J].
Bruns, A ;
Rohde, M ;
Berthe-Corti, L .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2001, 51 :1997-2006
[4]  
Cappuccino J.G., 2002, Microbiology: A Laboratory Manual, V6th
[5]   Gracilimonas tropica gen. nov., sp nov., isolated from a Synechococcus culture [J].
Choi, Dong H. ;
Zhang, Gwang I. ;
Noh, Jae H. ;
Kim, Woong-Seo ;
Cho, Byung C. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2009, 59 :1167-1172
[6]   The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data [J].
Cole, J. R. ;
Chai, B. ;
Farris, R. J. ;
Wang, Q. ;
Kulam-Syed-Mohideen, A. S. ;
McGarrell, D. M. ;
Bandela, A. M. ;
Cardenas, E. ;
Garrity, G. M. ;
Tiedje, J. M. .
NUCLEIC ACIDS RESEARCH, 2007, 35 :D169-D172
[7]  
Collins M. D., 1985, METHOD MICROBIOL, V18, P329, DOI DOI 10.1016/S0580-9517(08)70480-X
[8]   A rapid DNA isolation procedure for the identification of Campylobacter jejuni by the polymerase chain reaction [J].
Englen, MD ;
Kelley, LC .
LETTERS IN APPLIED MICROBIOLOGY, 2000, 31 (06) :421-426
[9]   EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J].
FELSENSTEIN, J .
JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) :368-376
[10]   TOWARD DEFINING COURSE OF EVOLUTION - MINIMUM CHANGE FOR A SPECIFIC TREE TOPOLOGY [J].
FITCH, WM .
SYSTEMATIC ZOOLOGY, 1971, 20 (04) :406-&