ONCOGENE-TUMOR SUPPRESSOR GENE FEEDBACK INTERACTIONS AND THEIR CONTROL

被引:1
作者
Aguda, Baltazar D. [1 ]
del Rosario, Ricardo C. H. [2 ]
Chan, Michael W. Y. [3 ,4 ]
机构
[1] DiseasePathways LLC, Bethesda, MD 20814 USA
[2] Genome Inst Singapore, Computat & Syst Biol, Singapore 138672, Singapore
[3] Natl Chung Cheng Univ, Dept Life Sci, Min Hsiung, China Yi, Taiwan
[4] Natl Chung Cheng Univ, Inst Mol Biol, Min Hsiung, China Yi, Taiwan
关键词
Oncogene-tumor suppressor gene pairs; myc; p53; kras; ink4a; e2f1; miR-17-92; network stability; feedback loops; cycle strength; drug targets; MOLECULAR-BIOLOGY; CELL-PROLIFERATION; C-MYC; CANCER; LOOP; HEAD; CENSUS;
D O I
10.3934/mbe.2015.12.1277
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
We propose the hypothesis that for a particular type of cancer there exists a key pair of oncogene (OCG) and tumor suppressor gene (TSG) that is normally involved in strong stabilizing negative feedback loops (nFBLs) of molecular interactions, and it is these interactions that are sufficiently perturbed during cancer development. These nFBLs are thought to regulate oncogenic positive feedback loops (pFBLs) that are often required for the normal cellular functions of oncogenes. Examples given in this paper are the pairs of MYC and p53, KRAS and INK4A, and E2F1 and miR-17-92. We propose dynamical models of the aforementioned OCG-TSG interactions and derive stability conditions of the steady states in terms of strengths of cycles in the qualitative interaction network. Although these conditions are restricted to predictions of local stability, their simple linear expressions in terms of competing nFBLs and pFBLs make them intuitive and practical guides for experimentalists aiming to discover drug targets and stabilize cancer networks.
引用
收藏
页码:1277 / 1288
页数:12
相关论文
共 29 条
[1]   From pathways Databases to network models of switching Behavior [J].
Aguda, Baltazar D. ;
Goryachev, Andrew B. .
PLOS COMPUTATIONAL BIOLOGY, 2007, 3 (09) :1674-1678
[2]  
Aguda BD, 2014, MOLECULAR DIAGNOSTICS AND TREATMENT OF PANCREATIC CANCER: SYSTEMS AND NETWORK BIOLOGY APPROACHES, P281, DOI 10.1016/B978-0-12-408103-1.00012-1
[3]  
Aguda Baltazar D, 2013, Curr Drug Discov Technol, V10, P125
[4]   Qualitative Network Modeling of the Myc-p53 Control System of Cell Proliferation and Differentiation [J].
Aguda, Baltazar D. ;
Kim, Yangjin ;
Kim, Hong Sug ;
Friedman, Avner ;
Fine, Howard A. .
BIOPHYSICAL JOURNAL, 2011, 101 (09) :2082-2091
[5]   MicroRNA regulation of a cancer network: Consequences of the feedback loops involving miR-17-92, E2F, and Myc [J].
Aguda, Baltazar D. ;
Kim, Yangjin ;
Piper-Hunter, Melissa G. ;
Friedman, Avner ;
Marsh, Clay B. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (50) :19678-19683
[6]   The biology of ovarian cancer: new opportunities for translation [J].
Bast, Robert C., Jr. ;
Hennessy, Bryan ;
Mills, Gordon B. .
NATURE REVIEWS CANCER, 2009, 9 (06) :415-428
[7]   Comprehensive genomic characterization defines human glioblastoma genes and core pathways [J].
Chin, L. ;
Meyerson, M. ;
Aldape, K. ;
Bigner, D. ;
Mikkelsen, T. ;
VandenBerg, S. ;
Kahn, A. ;
Penny, R. ;
Ferguson, M. L. ;
Gerhard, D. S. ;
Getz, G. ;
Brennan, C. ;
Taylor, B. S. ;
Winckler, W. ;
Park, P. ;
Ladanyi, M. ;
Hoadley, K. A. ;
Verhaak, R. G. W. ;
Hayes, D. N. ;
Spellman, Paul T. ;
Absher, D. ;
Weir, B. A. ;
Ding, L. ;
Wheeler, D. ;
Lawrence, M. S. ;
Cibulskis, K. ;
Mardis, E. ;
Zhang, Jinghui ;
Wilson, R. K. ;
Donehower, L. ;
Wheeler, D. A. ;
Purdom, E. ;
Wallis, J. ;
Laird, P. W. ;
Herman, J. G. ;
Schuebel, K. E. ;
Weisenberger, D. J. ;
Baylin, S. B. ;
Schultz, N. ;
Yao, Jun ;
Wiedemeyer, R. ;
Weinstein, J. ;
Sander, C. ;
Gibbs, R. A. ;
Gray, J. ;
Kucherlapati, R. ;
Lander, E. S. ;
Myers, R. M. ;
Perou, C. M. ;
McLendon, Roger .
NATURE, 2008, 455 (7216) :1061-1068
[8]   Comprehensive molecular profiling of lung adenocarcinoma [J].
Collisson, Eric A. ;
Campbell, Joshua D. ;
Brooks, Angela N. ;
Berger, Alice H. ;
Lee, William ;
Chmielecki, Juliann ;
Beer, David G. ;
Cope, Leslie ;
Creighton, Chad J. ;
Danilova, Ludmila ;
Ding, Li ;
Getz, Gad ;
Hammerman, Peter S. ;
Hayes, D. Neil ;
Hernandez, Bryan ;
Herman, James G. ;
Heymach, John V. ;
Jurisica, Igor ;
Kucherlapati, Raju ;
Kwiatkowski, David ;
Ladanyi, Marc ;
Robertson, Gordon ;
Schultz, Nikolaus ;
Shen, Ronglai ;
Sinha, Rileen ;
Sougnez, Carrie ;
Tsao, Ming-Sound ;
Travis, William D. ;
Weinstein, John N. ;
Wigle, Dennis A. ;
Wilkerson, Matthew D. ;
Chu, Andy ;
Cherniack, Andrew D. ;
Hadjipanayis, Angela ;
Rosenberg, Mara ;
Weisenberger, Daniel J. ;
Laird, Peter W. ;
Radenbaugh, Amie ;
Ma, Singer ;
Stuart, Joshua M. ;
Byers, Lauren Averett ;
Baylin, Stephen B. ;
Govindan, Ramaswamy ;
Meyerson, Matthew ;
Rosenberg, Mara ;
Gabriel, Stacey B. ;
Cibulskis, Kristian ;
Sougnez, Carrie ;
Kim, Jaegil ;
Stewart, Chip .
NATURE, 2014, 511 (7511) :543-550
[9]   Molecular biology of lung cancer [J].
Cooper, Wendy A. ;
Lam, David C. L. ;
O'Toole, Sandra A. ;
Minna, John D. .
JOURNAL OF THORACIC DISEASE, 2013, 5 :S479-S490
[10]   An NF-κB pathway-mediated positive feedback loop amplifies Ras activity to pathological levels in mice [J].
Daniluk, Jaroslaw ;
Liu, Yan ;
Deng, Defeng ;
Chu, Jun ;
Huang, Haojie ;
Gaiser, Sebastian ;
Cruz-Monserrate, Zobeida ;
Wang, Huamin ;
Ji, Baoan ;
Logsdon, Craig D. .
JOURNAL OF CLINICAL INVESTIGATION, 2012, 122 (04) :1519-1528