Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes

被引：152

作者：

Abbott, Wade ^{[1
]}

Alber, Orly ^{[2
]}

Bayer, Ed ^{[2
]}

Berrin, Jean-Guy ^{[3
]}

Boraston, Alisdair ^{[4
]}

Brumer, Harry ^{[5
]}

Brzezinski, Ryszard ^{[6
]}

Clarke, Anthony ^{[7
]}

Cobucci-Ponzano, Beatrice ^{[8
]}

Cockburn, Darrell ^{[9
]}

Coutinho, Pedro ^{[10
]}

Czjzek, Mirjam ^{[11
]}

Dassa, Bareket ^{[2
]}

Davies, Gideon John ^{[12
]}

Eijsink, Vincent ^{[13
]}

Eklof, Jens ^{[5
]}

Felice, Alfons ^{[14
]}

Ficko-Blean, Elizabeth ^{[11
]}

Pincher, Geoff ^{[15
]}

Fontaine, Thierry ^{[16
]}

Fujimoto, Zui ^{[17
]}

Fujita, Kiyotaka ^{[18
]}

Fushinobu, Shinya ^{[19
]}

Gilbert, Harry ^{[20
]}

Gloster, Tracey ^{[21
]}

Goddard-Borger, Ethan ^{[22
]}

Greig, Ian ^{[23
]}

Hehemann, Jan-Hendrik ^{[24
]}

Hemsworth, Glyn ^{[25
]}

Henrissat, Bernard ^{[11
]}

Hidaka, Masafumi ^{[19
]}

Hurtado-Guerrero, Ramon ^{[26
]}

Igarashi, Kiyohiko ^{[19
]}

Ishida, Takuya ^{[19
]}

Janecek, Stefan ^{[27
]}

Jongkees, Seino ^{[19
]}

Juge, Nathalie ^{[28
]}

Kaneko, Satoshi ^{[29
]}

Katayama, Takane ^{[30
]}

Kitaoka, Motomitsu ^{[31
]}

Konno, Naotake ^{[32
]}

Kracher, Daniel ^{[14
]}

Kulminskaya, Anna ^{[33
]}

van Bueren, Alicia Lammerts ^{[34
]}

Larsen, Sine ^{[35
]}

Lee, Junho ^{[36
]}

Linder, Markus ^{[37
]}

LoLeggio, Leila ^{[35
]}

Ludwig, Roland ^{[14
]}

Luis, Ana ^{[38
]}

机构：

[1] Agr & Agri Food Canada, Ottawa, ON, Canada

[2] Weizmann Inst Sci, Rehovot, Israel

[3] INRA, Paris, France

[4] Univ Victoria, Victoria, BC, Canada

[5] Univ British Columbia, Vancouver, BC, Canada

[6] Univ Sherbrooke, Sherbrooke, PQ, Canada

[7] Univ Guelph, Guelph, ON, Canada

[8] CNR, Rome, Italy

[9] Penn State Univ, University Pk, PA 16802 USA

[10] Aix Marseille Univ, Marseille, France

[11] CNRS, Paris, France

[12] Univ York, York, N Yorkshire, England

[13] Norwegian Univ Life Sci, As, Norway

[14] Univ Bodenkultur, Vienna, Austria

[15] Univ Adelaide, Adelaide, SA, Australia

[16] Inst Pasteur, Paris, France

[17] Natl Agr & Food Res Org, Tsukuba, Ibaraki, Japan

[18] Kagoshima Univ, Kagoshima, Japan

[19] Univ Tokyo, Tokyo, Japan

[20] Newcastle Univ, Newcastle Upon Tyne, Tyne & Wear, England

[21] Univ St Andrews, St Andrews, Fife, Scotland

[22] Walter & Eliza Hall Inst Med Res, Parkville, Vic, Australia

[23] Simon Fraser Univ, Burnaby, BC, Canada

[24] Max Planck Inst Marine Microbiol, Bremen, Germany

[25] Univ Leeds, Leeds, W Yorkshire, England

[26] Univ Zaragoza, Zaragoza, Spain

[27] Slovak Acad Sci, Bratislava, Slovakia

[28] Quadram Inst, Norwich, Norfolk, England

[29] Univ Ryukyus, Nishihara, Okinawa, Japan

[30] Ishikawa Prefectural Univ, Nonoichi, Ishikawa, Japan

[31] Natl Agr & Food Res Org, Tsukuba, Ibaraki, Japan

[32] Utsunomiya Univ, Utsunomiya, Tochigi, Japan

[33] Petersburg Nucl Phys Inst, St Petersburg, Russia

[34] Univ Groningen, Groningen, Netherlands

[35] Univ Copenhagen, Copenhagen, Denmark

[36] Univ British Columbia, Vancouver, BC, Canada

[37] Aalto Univ, Espoo, Finland

[38] Univ Lisbon, Lisbon, Portugal

[39] Univ Oulu, Oulu, Finland

[40] Univ Manitoba, Winnipeg, MB, Canada

[41] Univ Lethbridge, Lethbridge, AB, Canada

[42] Hokkaido Univ, Sapporo, Hokkaido, Japan

[43] Niigata Univ, Niigata, Japan

[44] Univ Ghent, Ghent, Belgium

[45] Kinki Univ, Higashiosaka, Osaka, Japan

[46] Queen Mary Univ London, London, England

[47] Sveriges Lantbruksuniv, Uppsala, Sweden

[48] Natl Ctr Biotechnol, Madrid, Spain

[49] Iowa State Univ, Ames, IA USA

[50] Inst Natl Sci Appl, Toulouse, France

来源：

GLYCOBIOLOGY | 2018年 / 28卷 / 01期

基金：

英国生物技术与生命科学研究理事会; 加拿大自然科学与工程研究理事会;

关键词：

biocuration; bioinformatics; carbohydrate-active enzymes; glycoscience; glycobiology; GLYCOSIDE HYDROLASE FAMILY; POLYSACCHARIDE LYASES; CLASSIFICATION; RECOGNITION; MECHANISMS;

D O I：

10.1093/glycob/cwx089

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

CAZypedia was initiated in 2007 to create a comprehensive, living encyclopedia of the carbohydrate active enzymes (CAZymes) and associated carbohydrate-binding modules involved in the synthesis, modification and degradation of complex carbohydrates. CAZypedia is closely connected with the actively curated CAZy database, which provides a sequence-based foundation for the biochemical, mechanistic and structural characterization of these diverse proteins. Now celebrating its 10th anniversary online, CAZypedia is a successful example of dynamic, community-driven and expert-based biocuration. CAZypedia is an open-access resource available at URL http://www.cazypedia.org.

引用

页码：3 / 8

页数：6

共 18 条

[1] Biochemical and structural analyses of a bacterial endo-β-1,2-glucanase reveal a new glycoside hydrolase family [J].