Shining Light on an mGlu5 Photoswitchable NAM: A Theoretical Perspective

被引:17
作者
Dalton, James A. R. [1 ]
Lans, Isaias [1 ]
Rovira, Xavier [6 ,7 ]
Malhaire, Fanny [6 ,7 ]
Gomez-Santacana, Xavier [1 ,2 ,3 ]
Pittolo, Silvia [3 ]
Gorostiza, Pau [3 ,4 ,5 ]
Llebaria, Amadeu [2 ]
Goudet, Cyril [6 ,7 ]
Pin, Jean-Philippe [6 ,7 ]
Giraldo, Jesus [1 ]
机构
[1] Univ Autonoma Barcelona, Inst Neuro Sci & Unit Bioestadst, Lab Mol Neuropharmacol & Bioinformat, Bellaterra 08193, Spain
[2] CSIC, Inst Quim Avancada Catalunya IQAC, Dept Biomed Chem, Med Chem Lab, Jordi Girona 18-26, ES-08034 Barcelona, Spain
[3] IBEC, Barcelona, Spain
[4] Network Biomed Res Ctr Bioengn Biomat & Nanomed C, Zaragoza, Spain
[5] Catalan Inst Res & Adv Studies ICREA, Barcelona, Spain
[6] Univ Montpellier, CNRS, Inst Genom Fonct, UMR 5203, Montpellier, France
[7] INSERM, U1191, F-34000 Montpellier, France
关键词
Allosteric modulation; docking; metabotropic glutamate receptor; molecular dynamics; mutation; protein structure; transmembrane domain; METABOTROPIC GLUTAMATE RECEPTORS; ALLOSTERIC MODULATOR; MOLECULAR SWITCH; BINDING POCKET; DYNAMICS; ACID;
D O I
10.2174/1570159X13666150407231417
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
Metabotropic glutamate receptors (mGluRs) are important drug targets because of their involvement in several neurological diseases. Among mGluRs, mGlu5 is a particularly high-profile target because its positive or negative allosteric modulation can potentially treat schizophrenia or anxiety and chronic pain, respectively. Here, we computationally and experimentally probe the functional binding of a novel photoswitchable mGlu5 NAM, termed alloswitch-1, which loses its NAM functionality under violet light. We show alloswitch-1 binds deep in the allosteric pocket in a similar fashion to mavoglurant, the co-crystallized NAM in the mGlu5 transmembrane domain crystal structure. Alloswitch-1, like NAM 2-Methyl-6-(phenylethynyl) pyridine (MPEP), is significantly affected by P655M mutation deep in the allosteric pocket, eradicating its functionality. In MD simulations, we show alloswitch-1 and MPEP stabilize the co-crystallized water molecule located at the bottom of the allosteric site that is seemingly characteristic of the inactive receptor state. Furthermore, both NAMs form H-bonds with S809 on helix 7, which may constitute an important stabilizing interaction for NAM-induced mGlu5 inactivation. Alloswitch-1, through isomerization of its amide group from trans to cis is able to form an additional interaction with N747 on helix 5. This may be an important interaction for amide-containing mGlu5 NAMs, helping to stabilize their binding in a potentially unusual cis-amide state. Simulated conformational switching of alloswitch-1 in silico suggests photoisomerization of its azo group from trans to cis may be possible within the allosteric pocket. However, photoexcited alloswitch-1 binds in an unstable fashion, breaking H-bonds with the protein and destabilizing the co-crystallized water molecule. This suggests photoswitching may have destabilizing effects on mGlu5 binding and functionality.
引用
收藏
页码:441 / 454
页数:14
相关论文
共 58 条
[1]   The Cambridge Structural Database: a quarter of a million crystal structures and rising [J].
Allen, FH .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 2002, 58 (3 PART 1) :380-388
[2]  
[Anonymous], 2014, SCHRODINGER RELEASE
[3]   Structures of mGluRs shed light on the challenges of drug development of allosteric modulators [J].
Bennett, Kirstie A. ;
Dore, Andrew S. ;
Christopher, John A. ;
Weiss, Dahlia R. ;
Marshall, Fiona H. .
CURRENT OPINION IN PHARMACOLOGY, 2015, 20 :1-7
[4]   PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES [J].
BERNSTEIN, FC ;
KOETZLE, TF ;
WILLIAMS, GJB ;
MEYER, EF ;
BRICE, MD ;
RODGERS, JR ;
KENNARD, O ;
SHIMANOUCHI, T ;
TASUMI, M .
JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) :535-542
[5]   Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone φ, ψ and Side-Chain χ1 and χ2 Dihedral Angles [J].
Best, Robert B. ;
Zhu, Xiao ;
Shim, Jihyun ;
Lopes, Pedro E. M. ;
Mittal, Jeetain ;
Feig, Michael ;
MacKerell, Alexander D., Jr. .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2012, 8 (09) :3257-3273
[6]   Ab initio protein structure prediction: Progress and prospects [J].
Bonneau, R ;
Baker, D .
ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE, 2001, 30 :173-189
[7]   Retrieval of crystallographically-derived molecular geometry information [J].
Bruno, IJ ;
Cole, JC ;
Kessler, M ;
Luo, J ;
Motherwell, WDS ;
Purkis, LH ;
Smith, BR ;
Taylor, R ;
Cooper, RI ;
Harris, SE ;
Orpen, AG .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 2004, 44 (06) :2133-2144
[8]   Strategies for the identification of allosteric modulators of G-protein-coupled receptors [J].
Burford, Neil T. ;
Watson, John ;
Bertekap, Robert ;
Alt, Andrew .
BIOCHEMICAL PHARMACOLOGY, 2011, 81 (06) :691-702
[9]  
Case D.A., 2014, Amber, V14, P29
[10]   Metabotropic glutamate receptors and the control of chronic pain [J].
Chiechio, Santina ;
Nicoletti, Ferdinando .
CURRENT OPINION IN PHARMACOLOGY, 2012, 12 (01) :28-34