Architectural and Functional Commonalities between Enhancers and Promoters

被引:230
作者
Kim, Tae-Kyung [1 ]
Shiekhattar, Ramin [2 ]
机构
[1] Univ Texas SW Med Ctr Dallas, Dept Neurosci, Dallas, TX 75390 USA
[2] Univ Miami, Dept Human Genet, Sylvester Comprehens Canc Ctr, Miller Sch Med, Miami, FL 33136 USA
基金
美国国家科学基金会;
关键词
RNA-POLYMERASE-II; IMMUNOGLOBULIN HEAVY-CHAIN; LONG NONCODING RNAS; BETA-GLOBIN GENE; SUPER-ENHANCERS; HS2; ENHANCER; U1; SNRNP; TRANSCRIPTIONAL PROMOTERS; INTERGENIC TRANSCRIPTION; CHROMATIN LANDSCAPE;
D O I
10.1016/j.cell.2015.08.008
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
With the explosion of genome-wide studies of regulated transcription, it has become clear that traditional definitions of enhancers and promoters need to be revisited. These control elements can now be characterized in terms of their local and regional architecture, their regulatory components, including histone modifications and associated binding factors, and their functional contribution to transcription. This Review discusses unifying themes between promoters and enhancers in transcriptional regulatory mechanisms.
引用
收藏
页码:948 / 959
页数:12
相关论文
共 116 条
  • [11] INVIVO SEQUENCE REQUIREMENTS OF THE SV40 EARLY PROMOTER REGION
    BENOIST, C
    CHAMBON, P
    [J]. NATURE, 1981, 290 (5804) : 304 - 310
  • [12] U1 snRNP Determines mRNA Length and Regulates Isoform Expression
    Berg, Michael G.
    Singh, Larry N.
    Younis, Ihab
    Liu, Qiang
    Pinto, Anna Maria
    Kaida, Daisuke
    Zhang, Zhenxi
    Cho, Sungchan
    Sherrill-Mix, Scott
    Wan, Lili
    Dreyfuss, Gideon
    [J]. CELL, 2012, 150 (01) : 53 - 64
  • [13] A bivalent chromatin structure marks key developmental genes in embryonic stem cells
    Bernstein, BE
    Mikkelsen, TS
    Xie, XH
    Kamal, M
    Huebert, DJ
    Cuff, J
    Fry, B
    Meissner, A
    Wernig, M
    Plath, K
    Jaenisch, R
    Wagschal, A
    Feil, R
    Schreiber, SL
    Lander, ES
    [J]. CELL, 2006, 125 (02) : 315 - 326
  • [14] HEAT-SHOCK REGULATORY ELEMENTS FUNCTION AS AN INDUCIBLE ENHANCER IN THE XENOPUS HSP70 GENE AND WHEN LINKED TO A HETEROLOGOUS PROMOTER
    BIENZ, M
    PELHAM, HRB
    [J]. CELL, 1986, 45 (05) : 753 - 760
  • [15] Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    Birney, Ewan
    Stamatoyannopoulos, John A.
    Dutta, Anindya
    Guigo, Roderic
    Gingeras, Thomas R.
    Margulies, Elliott H.
    Weng, Zhiping
    Snyder, Michael
    Dermitzakis, Emmanouil T.
    Stamatoyannopoulos, John A.
    Thurman, Robert E.
    Kuehn, Michael S.
    Taylor, Christopher M.
    Neph, Shane
    Koch, Christoph M.
    Asthana, Saurabh
    Malhotra, Ankit
    Adzhubei, Ivan
    Greenbaum, Jason A.
    Andrews, Robert M.
    Flicek, Paul
    Boyle, Patrick J.
    Cao, Hua
    Carter, Nigel P.
    Clelland, Gayle K.
    Davis, Sean
    Day, Nathan
    Dhami, Pawandeep
    Dillon, Shane C.
    Dorschner, Michael O.
    Fiegler, Heike
    Giresi, Paul G.
    Goldy, Jeff
    Hawrylycz, Michael
    Haydock, Andrew
    Humbert, Richard
    James, Keith D.
    Johnson, Brett E.
    Johnson, Ericka M.
    Frum, Tristan T.
    Rosenzweig, Elizabeth R.
    Karnani, Neerja
    Lee, Kirsten
    Lefebvre, Gregory C.
    Navas, Patrick A.
    Neri, Fidencio
    Parker, Stephen C. J.
    Sabo, Peter J.
    Sandstrom, Richard
    Shafer, Anthony
    [J]. NATURE, 2007, 447 (7146) : 799 - 816
  • [16] A TRANSCRIPTION FACTOR WHICH BINDS TO THE ENHANCERS OF SV40, IMMUNOGLOBULIN HEAVY-CHAIN AND U2 SNRNA GENES
    BOHMANN, D
    KELLER, W
    DALE, T
    SCHOLER, HR
    TEBB, G
    MATTAJ, IW
    [J]. NATURE, 1987, 325 (6101) : 268 - 272
  • [17] Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
    Bonn, Stefan
    Zinzen, Robert P.
    Girardot, Charles
    Gustafson, E. Hilary
    Perez-Gonzalez, Alexis
    Delhomme, Nicolas
    Ghavi-Helm, Yad
    Wilczynski, Bartek
    Riddell, Andrew
    Furlong, Eileen E. M.
    [J]. NATURE GENETICS, 2012, 44 (02) : 148 - 156
  • [18] High-resolution mapping and characterization of open chromatin across the genome
    Boyle, Alan P.
    Davis, Sean
    Shulha, Hennady P.
    Meltzer, Paul
    Margulies, Elliott H.
    Weng, Zhiping
    Furey, Terrence S.
    Crawford, Gregory E.
    [J]. CELL, 2008, 132 (02) : 311 - 322
  • [19] Genomic mapping of RNA polymerase II reveals sites of co-transcriptional regulation in human cells
    Brodsky, AS
    Meyer, CA
    Swinburne, IA
    Giles, H
    Keenan, BJ
    Liu, XLS
    Fox, EA
    Silver, PA
    [J]. GENOME BIOLOGY, 2005, 6 (08)
  • [20] Buenrostro JD, 2013, NAT METHODS, V10, P1213, DOI [10.1038/NMETH.2688, 10.1038/nmeth.2688]