Microbial population heterogeneity versus bioreactor heterogeneity: Evaluation of Redox Sensor Green as an exogenous metabolic biosensor

被引:22
作者
Baert, Jonathan [1 ]
Delepierre, Anissa [1 ]
Telek, Samuel [1 ]
Fickers, Patrick [1 ]
Toye, Dominique [2 ]
Delamotte, Anne [2 ]
Lara, Alvaro R. [3 ]
Jaen, Karim E. [3 ]
Gosset, Guillermo [4 ]
Jensen, Peter R. [5 ]
Delvigne, Frank [1 ]
机构
[1] Univ Liege, Gembloux Agrobio Tech, Microbial Proc & Interact MiPI, B-5030 Passage Des Deportes, Gembloux, Belgium
[2] Univ Liege, Dept Chem Engn Environm & Proc PEPs, Liege, Belgium
[3] Univ Autonoma Metropolitana Cuajimalpa, Dept Proc & Tecnol, Mexico City, DF, Mexico
[4] Univ Nacl Autonoma Mexico, Inst Biotecnol, Cuernavaca, Morelos, Mexico
[5] Tech Univ Denmark DTU, Natl Food Inst, Lyngby, Denmark
来源
ENGINEERING IN LIFE SCIENCES | 2016年 / 16卷 / 07期
关键词
Biological noise; Flow cytometry; Phenotypic heterogeneity; Scale-down; Single cell; LARGE-SCALE BIOREACTORS; SINGLE-CELL ANALYSIS; ESCHERICHIA-COLI; GENE-EXPRESSION; SACCHAROMYCES-CEREVISIAE; NOISE; HEMOGLOBIN; BIOPROCESSES; VARIABILITY; ROBUSTNESS;
D O I
10.1002/elsc.201500149
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Microbial heterogeneity in metabolic performances has attracted a lot of attention, considering its potential impact on industrial bioprocesses. However, little is known about the impact of extracellular perturbations (i.e. bioreactor heterogeneity) on cell-to-cell variability in metabolic performances (i.e. microbial population heterogeneity). In this work, we have evaluated the relevance of Redox Sensor Green (RSG) as an exogenous biosensor of metabolic activity at the single-cell level. RSG signal is proportional to the activity of the electron transport chain and its signal is strongly affected by metabolic burden, availability of electron final acceptor, and side metabolisms (i.e. overflow and mixed acid fermentation). RSG can also be used for the estimation of the impact of scale-down conditions on microbial metabolic robustness. The relationship linking averaged RSG activity and its cell-to-cell variability (noise) has been highlighted but seems unaffected by environmental perturbations.
引用
收藏
页码:643 / 651
页数:9
相关论文
共 40 条
[11]   Microbial heterogeneity affects bioprocess robustness: Dynamic single-cell analysis contributes to understanding of microbial populations [J].
Delvigne, Frank ;
Goffin, Philippe .
BIOTECHNOLOGY JOURNAL, 2014, 9 (01) :61-72
[12]   Bioreactor mixing efficiency modulates the activity of a prpoS::GFP reporter gene in E. coli [J].
Delvigne, Frank ;
Boxus, Mathieu ;
Ingels, Sophie ;
Thonart, Philippe .
MICROBIAL CELL FACTORIES, 2009, 8
[13]   Site-directed mutagenesis of bacterial hemoglobin: The role of glutamine (E7) in oxygen-binding in the distal heme pocket [J].
Dikshit, KL ;
Orii, Y ;
Navani, N ;
Patel, S ;
Huang, HY ;
Stark, BC ;
Webster, DA .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 1998, 349 (01) :161-166
[14]   Physiological responses to mixing in large scale bioreactors [J].
Enfors, SO ;
Jahic, M ;
Rozkov, A ;
Xu, B ;
Hecker, M ;
Jürgen, B ;
Krüger, E ;
Schweder, T ;
Hamer, G ;
O'Beirne, D ;
Noisommit-Rizzi, N ;
Reuss, M ;
Boone, L ;
Hewitt, C ;
McFarlane, C ;
Nienow, A ;
Kovacs, T ;
Trägårdh, C ;
Fuchs, L ;
Revstedt, J ;
Friberg, PC ;
Hjertager, B ;
Blomsten, G ;
Skogman, H ;
Hjort, S ;
Hoeks, F ;
Lin, HY ;
Neubauer, P ;
van der Lans, R ;
Luyben, K ;
Vrabel, P ;
Manelius, Å .
JOURNAL OF BIOTECHNOLOGY, 2001, 85 (02) :175-185
[15]   Bacterial hemoglobins and flavohemoglobins: versatile proteins and their impact on microbiology and biotechnology [J].
Frey, AD ;
Kallio, PT .
FEMS MICROBIOLOGY REVIEWS, 2003, 27 (04) :525-545
[16]   Single-cell microfluidics: opportunity for bioprocess development [J].
Gruenberger, Alexander ;
Wiechert, Wolfgang ;
Kohlheyer, Dietrich .
CURRENT OPINION IN BIOTECHNOLOGY, 2014, 29 :15-23
[17]   Design of growth-dependent biosensors based on destabilized GFP for the detection of physiological behavior of Escherichia coli in heterogeneous bioreactors [J].
Han, Shanshan ;
Delvigne, Frank ;
Brognaux, Alison ;
Charbon, Gitte E. ;
Sorensen, Soren J. .
BIOTECHNOLOGY PROGRESS, 2013, 29 (02) :553-563
[18]   Basic Regulatory Principles of Escherichia coli's Electron Transport Chain for Varying Oxygen Conditions [J].
Henkel, Sebastian G. ;
Ter Beek, Alexander ;
Steinsiek, Sonja ;
Stagge, Stefan ;
Bettenbrock, Katja ;
de Mattos, M. Joost Teixeira ;
Sauter, Thomas ;
Sawodny, Oliver ;
Ederer, Michael .
PLOS ONE, 2014, 9 (09)
[19]   Destabilized eYFP variants for dynamic gene expression studies in Corynebacterium glutamicum [J].
Hentschel, Eva ;
Will, Cornelia ;
Mustafi, Nurije ;
Burkovski, Andreas ;
Rehm, Nadine ;
Frunzke, Julia .
MICROBIAL BIOTECHNOLOGY, 2013, 6 (02) :196-201
[20]   Metabolic and Transcriptional Response to Cofactor Perturbations in Escherichia coli [J].
Holm, Anders K. ;
Blank, Lars M. ;
Oldiges, Marco ;
Schmid, Andreas ;
Solem, Christian ;
Jensen, Peter R. ;
Vemuri, Goutham N. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2010, 285 (23) :17498-17506