Effect of glycerol-water binary mixtures on the structure and dynamics of protein solutions

被引:13
|
作者
GhattyVenkataKrishna, Pavan K. [1 ]
Carri, Gustavo A. [2 ]
机构
[1] Oak Ridge Natl Lab, Computat Biol & Bioinformat Grp, Oak Ridge, TN 37830 USA
[2] Univ Akron, Inst Polymer Sci & Polymer Engn, Dept Polymer Sci, Akron, OH 44325 USA
关键词
glycerol; biopreservation; protein dynamics; molecular dynamics; simulations; HYDROGEN-BOND DYNAMICS; BOMBYX-MORI; DIELECTRIC-RELAXATION; MICROSCOPIC INSIGHTS; ENZYMATIC PATHWAYS; NEUTRON-SCATTERING; DIAPAUSING EGG; STABILIZATION; MECHANISM; HYDRATION;
D O I
10.1080/07391102.2013.773562
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We have performed 20ns of fully atomistic molecular dynamics simulations of Hen Egg-White Lysozyme in 0, 10, 20, 30, and 100% by weight of glycerol in water to better understand the microscopic physics behind the bioprotection offered by glycerol to naturally occuring biological systems. The solvent exposure of protein surface residues changes when glycerol is introduced. The dynamic behavior of the protein, as quantified by the incoherent intermediate scattering function, shows a nonmonotonic dependence on glycerol content. The fluctuations of the protein residues with respect to each other were found to be similar in all water-containing solvents, but different from the pure glycerol case. The increase in the number of protein-glycerol hydrogen bonds in glycerol-water binary mixtures explains the slowing down of protein dynamics as the glycerol content increases. We also explored the dynamic behavior of the hydration layer. We show that the short length scale dynamics of this layer are insensitive to glycerol concentration. However, the long length scale behavior shows a significant dependence on glycerol content. We also provide insights into the behavior of bound and mobile water molecules.
引用
收藏
页码:424 / 437
页数:14
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