Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction

被引:261
作者
Baiz, Carlos R. [3 ]
Blasiak, Bartosz [4 ]
Bredenbeck, Jens [5 ]
Cho, Minhaeng [1 ,2 ]
Choi, Jun-Ho [6 ]
Corcelli, Steven A. [7 ]
Dijkstra, Arend G. [8 ,9 ]
Feng, Chi-Jui [10 ,11 ]
Garrett-Roe, Sean [12 ]
Ge, Nien-Hui [13 ]
Hanson-Heine, Magnus W. D. [14 ]
Hirst, Jonathan D. [14 ]
Jansen, Thomas L. C. [15 ]
Kwac, Kijeong [1 ]
Kubarych, Kevin J. [16 ]
Londergan, Casey H. [17 ]
Maekawa, Hiroaki [13 ]
Reppert, Mike [18 ]
Saito, Shinji [19 ]
Roy, Santanu [20 ]
Skinner, James L. [21 ]
Stock, Gerhard [22 ]
Straub, John E. [23 ]
Thielges, Megan C. [24 ]
Tominaga, Keisuke [25 ]
Tokmakoff, Andrei [10 ,11 ]
Torii, Hajime [26 ,27 ]
Wang, Lu [28 ]
Webb, Lauren J. [3 ]
Zanni, Martin T. [29 ]
机构
[1] Ctr Mol Spect & Dynam, Seoul 02841, South Korea
[2] Korea Univ, Dept Chem, Seoul 02841, South Korea
[3] Univ Texas Austin, Dept Chem, Austin, TX 78712 USA
[4] Wroclaw Univ Sci & Technol, Dept Phys & Quantum Chem, PL-50370 Wroclaw, Poland
[5] Goethe Univ Frankfurt, Inst Biophys, D-60438 Frankfurt, Germany
[6] Gwangju Inst Sci & Technol, Dept Chem, Gwangju 61005, South Korea
[7] Univ Notre Dame, Dept Chem & Biochem, Notre Dame, IN 46556 USA
[8] Univ Leeds, Sch Chem, Leeds LS2 9JT, W Yorkshire, England
[9] Univ Leeds, Sch Phys & Astron, Leeds LS2 9JT, W Yorkshire, England
[10] Univ Chicago, James Franck Inst, Dept Chem, Chicago, IL 60637 USA
[11] Univ Chicago, Inst Biophys Dynam, Chicago, IL 60637 USA
[12] Univ Pittsburgh, Dept Chem, Pittsburgh, PA 15260 USA
[13] Univ Calif Irvine, Dept Chem, Irvine, CA 92697 USA
[14] Univ Nottingham, Sch Chem, Nottingham NG7 2RD, England
[15] Univ Groningen, Zernike Inst Adv Mat, NL-9747 AG Groningen, Netherlands
[16] Univ Michigan, Dept Chem, Ann Arbor, MI 48109 USA
[17] Haverford Coll, Dept Chem, Haverford, PA 19041 USA
[18] Univ Toronto, Dept Chem, Chem Phys Theory Grp, Toronto, ON M5S 3H6, Canada
[19] Inst Mol Sci, Dept Theoret & Computat Mol Sci, Okazaki, Aichi 4448585, Japan
[20] Oak Ridge Natl Lab, Chem Sci Div, Oak Ridge, TN 37831 USA
[21] Univ Chicago, Inst Mol Engn, Chicago, IL 60637 USA
[22] Albert Ludwigs Univ, Inst Phys, Biomol Dynam, D-79104 Freiburg, Germany
[23] Boston Univ, Dept Chem, Boston, MA 02215 USA
[24] Indiana Univ, Dept Chem, Bloomington, IN 47405 USA
[25] Kobe Univ, Mol Photosci Res Ctr, Nada Ku, Kobe, Hyogo 6570013, Japan
[26] Shizuoka Univ, Fac Engn, Dept Appl Chem & Biochem Engn, Hamamatsu, Shizuoka 4328561, Japan
[27] Shizuoka Univ, Grad Sch Sci & Technol, Dept Optoelect & Nanostruct Sci, Hamamatsu, Shizuoka 4328561, Japan
[28] Rutgers State Univ, Inst Quantitat Biomed, Dept Chem & Chem Biol, Piscataway, NJ 08854 USA
[29] Univ Wisconsin, Dept Chem, Madison, WI 53706 USA
基金
美国国家科学基金会; 欧盟地平线“2020”; 美国国家卫生研究院;
关键词
2D IR SPECTROSCOPY; 2-DIMENSIONAL INFRARED-SPECTROSCOPY; PROTEIN SECONDARY STRUCTURE; HYDROGEN-BOND DYNAMICS; SOLVATOCHROMIC COMPARISON METHOD; CLASSICAL MOLECULAR-DYNAMICS; FREQUENCY GENERATION SPECTROSCOPY; (CD-ALPHA)-D-ALPHA STRETCH MODE; TIME-DOMAIN CALCULATIONS; CARBON-DEUTERIUM BONDS;
D O I
10.1021/acs.chemrev.9b00813
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Vibrational spectroscopy is an essential tool in chemical analyses, biological assays, and studies of functional materials. Over the past decade, various coherent nonlinear vibrational spectroscopic techniques have been developed and enabled researchers to study time-correlations of the fluctuating frequencies that are directly related to solute-solvent dynamics, dynamical changes in molecular conformations and local electrostatic environments, chemical and biochemical reactions, protein structural dynamics and functions, characteristic processes of functional materials, and so on. In order to gain incisive and quantitative information on the local electrostatic environment, molecular conformation, protein structure and interprotein contacts, ligand binding kinetics, and electric and optical properties of functional materials, a variety of vibrational probes have been developed and site-specifically incorporated into molecular, biological, and material systems for time-resolved vibrational spectroscopic investigation. However, still, an all-encompassing theory that describes the vibrational solvatochromism, electrochromism, and dynamic fluctuation of vibrational frequencies has not been completely established mainly due to the intrinsic complexity of intermolecular interactions in condensed phases. In particular, the amount of data obtained from the linear and nonlinear vibrational spectroscopic experiments has been rapidly increasing, but the lack of a quantitative method to interpret these measurements has been one major obstacle in broadening the applications of these methods. Among various theoretical models, one of the most successful approaches is a semiempirical model generally referred to as the vibrational spectroscopic map that is based on a rigorous theory of intermolecular interactions. Recently, genetic algorithm, neural network, and machine learning approaches have been applied to the development of vibrational solvatochromism theory. In this review, we provide comprehensive descriptions of the theoretical foundation and various examples showing its extraordinary successes in the interpretations of experimental observations. In addition, a brief introduction to a newly created repository Web site (http://frequencymap.org) for vibrational spectroscopic maps is presented. We anticipate that a combination of the vibrational frequency map approach and state-of-the-art multidimensional vibrational spectroscopy will be one of the most fruitful ways to study the structure and dynamics of chemical, biological, and functional molecular systems in the future.
引用
收藏
页码:7152 / 7218
页数:67
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