Bacillus populi sp nov isolated from Populus euphratica rhizosphere soil of the Taklamakan desert

被引:10
作者
Liu, Bo [1 ]
Liu, Guo-Hong [1 ]
Wang, Xiao-Ying [1 ,2 ]
Wang, Jie-Ping [1 ]
Zhu, Yu-Jing [1 ]
Zhang, Hai-Feng [1 ]
Sengonca, Cetin [3 ]
机构
[1] Fujian Acad Agr Sci, Agr Bioresource Res Inst, Fuzhou 350003, Fujian, Peoples R China
[2] Fuzhou Univ, Fuzhou 350108, Fujian, Peoples R China
[3] Univ Bonn, Inst Crop Sci & Resource Conservat INRES, Meckenheimer Allee 166A, D-53115 Bonn, Germany
基金
中国国家自然科学基金;
关键词
Bacillus populi sp nov; taxono-genomics; Populus euphratica; rhizosphere soil; Taklamakan desert; DNA-DNA HYBRIDIZATION; FATTY-ACID; CLASSIFICATION; SEQUENCES; LIMITS;
D O I
10.1099/ijsem.0.002476
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A rod-shaped, endospore-forming, aerobic bacterium, designated FJAT-45347(T), was isolated from rhizosphere soil collected from the Taklamakan desert in Xinjiang (PR China). Growth was observed at 15-35 degrees C (optimum 25 degrees C), in 0% and 20.0% NaCl (optimum 8.0 %) and at pH 7.5-12.0 (optimum 8.0), respectively. The cell-wall peptidoglycan contained mesodiaminopimelic acid and the isoprenoid quinone was MK-7. The main fatty acids were iso-C-15:0, anteiso-C-15:0 and anteiso-C-17:0. The main polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. Phylogenetic analysis based on 16S rRNA gene sequences affiliated FJAT-45347(T) to the genus Bacillus, and it showed the highest sequence similarities to Bacillus clarkii DSM 8720(T) (96.1 %). The average nucleotide identity and in silico DNA-DNA hybridization values between FJAT-45347(T) and the most closely related species were 68.5 and 26.2 %, respectively, which were lower than the thresholds commonly used to define species (96 and 70 %, respectively), indicating that it represented a member of a different taxon. The DNA G+C content was 40.6 mol%. The phenotypic characters and taxono-genomics study revealed that FJAT-45347(T) represents a novel species of the genus Bacillus, for which the name Bacillus populi sp. nov. is proposed. The type strain is FJAT-45347(T) (=DSM 104632(T) =CCTCC AB 2016257(T)).
引用
收藏
页码:155 / 159
页数:5
相关论文
共 30 条
[1]   Bacillus polygoni sp nov., a moderately halophilic, non-motile obligate alkaliphile isolated from indigo balls [J].
Aino, Kenichi ;
Hirota, Kikue ;
Matsuno, Toshihide ;
Morita, Naoki ;
Nodasaka, Yoshinobu ;
Fujiwara, Taketomo ;
Matsuyama, Hidetoshi ;
Yoshimune, Kazuaki ;
Yumoto, Isao .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2008, 58 :120-124
[2]   Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison [J].
Auch, Alexander F. ;
von Jan, Mathias ;
Klenk, Hans-Peter ;
Goeker, Markus .
STANDARDS IN GENOMIC SCIENCES, 2010, 2 (01) :117-134
[3]   Bacillus aurantiacus sp nov., an alkaliphilic and moderately halophilic bacterium isolated from Hungarian soda lakes [J].
Borsodi, Andrea K. ;
Marialigeti, Karoly ;
Szabo, Gitta ;
Palatinszky, Marton ;
Pollak, Beatrix ;
Keki, Zsuzsa ;
Kovacs, Attila L. ;
Schumann, Peter ;
Toth, Erika M. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2008, 58 :845-851
[4]   Salinicoccus kunmingensis sp nov., a moderately halophilic bacterium isolated from a salt mine in Yunnan, south-west China [J].
Chen, Yi-Guang ;
Cui, Xiao-Long ;
Pukall, Ruediger ;
Li, Hui-Ming ;
Yang, Ya-Ling ;
Xu, Li-Hua ;
Wen, Meng-Liang ;
Peng, Oian ;
Jiang, Cheng-Lin .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 :2327-2332
[5]   DISTRIBUTION OF MENAQUINONES IN ACTINOMYCETES AND CORYNEBACTERIA [J].
COLLINS, MD ;
PIROUZ, T ;
GOODFELLOW, M ;
MINNIKIN, DE .
JOURNAL OF GENERAL MICROBIOLOGY, 1977, 100 (JUN) :221-230
[6]   EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J].
FELSENSTEIN, J .
JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) :368-376
[7]  
FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x
[8]   DNA-DNA hybridization values and their relationship to whole-genome sequence similarities [J].
Goris, Johan ;
Konstantinidis, Konstantinos T. ;
Klappenbach, Joel A. ;
Coenye, Tom ;
Vandamme, Peter ;
Tiedje, James M. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 :81-91
[9]   RAPID METHOD FOR DISTINCTION OF GRAM-NEGATIVE FROM GRAM-POSITIVE BACTERIA [J].
GREGERSEN, T .
EUROPEAN JOURNAL OF APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 1978, 5 (02) :123-127
[10]   Agrococcus jenensis gen nov, sp nov, a new genus of actinomycetes with diaminobutyric acid in the cell wall [J].
Groth, I ;
Schumann, P ;
Weiss, N ;
Martin, K ;
Rainey, FA .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1996, 46 (01) :234-239