Percolation transition of hydration water in biosystems

被引:15
作者
Oleinikova, Alla [1 ]
Brovchenko, Ivan [1 ]
机构
[1] Univ Dortmund, D-44227 Dortmund, Germany
关键词
percolation transition; hydration water; biosystems;
D O I
10.1080/00268970601108229
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Hydration water at the surface of a biomolecule may exist as an ensemble of small clusters or as a hydrogen-bonded spanning network, which homogeneously envelopes the biomolecule. The formation of this spanning water network occurs via an intrinsically rounded quasi-two-dimensional percolation transition. We propose methods to study the percolation transition of hydration water at the surface of a finite object, including the surface of a biomolecule. Application of the developed methods to the various model biosystems demonstrates the percolation transition of hydration water when the hydration level, temperature or pressure is varied. We show that the percolation transition of hydration water is closely related to the conformational transitions of hydrated biomolecules and to the qualitative changes of their dynamics. The nature of this coupling may be clarified by the analysis of the various physical properties when crossing the percolation threshold.
引用
收藏
页码:3841 / 3855
页数:15
相关论文
共 56 条
  • [1] Effects of boundary conditions on the critical spanning probability
    Acharyya, M
    Stauffer, D
    [J]. INTERNATIONAL JOURNAL OF MODERN PHYSICS C, 1998, 9 (04): : 643 - 647
  • [2] [Anonymous], 2018, INTRO PERCOLATION TH
  • [3] [Anonymous], [No title captured]
  • [4] MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH
    BERENDSEN, HJC
    POSTMA, JPM
    VANGUNSTEREN, WF
    DINOLA, A
    HAAK, JR
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (08) : 3684 - 3690
  • [5] The Protein Data Bank
    Berman, HM
    Westbrook, J
    Feng, Z
    Gilliland, G
    Bhat, TN
    Weissig, H
    Shindyalov, IN
    Bourne, PE
    [J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 235 - 242
  • [6] Thermal breaking of spanning water networks in the hydration shell of proteins
    Brovchenko, I
    Krukau, A
    Smolin, N
    Oleinikova, A
    Geiger, A
    Winter, R
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2005, 123 (22)
  • [7] Water in nanopores. I. Coexistence curves from gibbs ensemble monte carlo simulations
    Brovchenko, I
    Geiger, A
    Oleinikova, A
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2004, 120 (04) : 1958 - 1972
  • [8] Clustering of water molecules in aqueous solutions: Effect of water-solute interaction
    Brovchenko, I
    Geiger, A
    Oleinikova, A
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2004, 6 (08) : 1982 - 1987
  • [9] Water in nanopores in equilibrium with a bulk reservoir - Gibbs ensemble Monte Carlo simulations
    Brovchenko, I
    Geiger, A
    [J]. JOURNAL OF MOLECULAR LIQUIDS, 2002, 96-7 : 195 - 206
  • [10] BROVCHENKO I, 2006, HDB THEORETICAL COMP, pCH62