Chip-Seq and RNA-Seq studies reveal novel insights into the interactive and transcriptomic architecture of the human prostate cancer

被引:0
|
作者
Puto, Lorena A. [1 ]
Benner, Chris [1 ]
Hunter, Tony [1 ]
机构
[1] Salk Inst Biol Studies, La Jolla, CA 92037 USA
关键词
D O I
10.1158/1538-7445.TRANSCAGEN-A1-02
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
A1-02
引用
收藏
页数:2
相关论文
共 50 条
  • [41] Integrating RNA-seq and ChIP-seq data to characterize long non-coding RNAs in Drosophila melanogaster
    Chen, Mei-Ju May
    Chen, Li-Kai
    Lai, Yu-Shing
    Lin, Yu-Yu
    Wu, Dung-Chi
    Tung, Yi-An
    Liu, Kwei-Yan
    Shih, Hsueh-Tzu
    Chen, Yi-Jyun
    Lin, Yan-Liang
    Ma, Li-Ting
    Huang, Jian-Long
    Wu, Po-Chun
    Hong, Ming-Yi
    Chu, Fang-Hua
    Wu, June-Tai
    Li, Wen-Hsiung
    Chen, Chien-Yu
    BMC GENOMICS, 2016, 17
  • [42] Software pipelines for RNA-Seq, ChIP-Seq and germline variant calling analyses in common workflow language (CWL)
    Kyritsis, Konstantinos A.
    Pechlivanis, Nikolaos
    Psomopoulos, Fotis
    FRONTIERS IN BIOINFORMATICS, 2023, 3
  • [43] Protocol for integrated analysis of bacterial RNA-seq and ChIP-seq data for establishing a co-expression network
    Ding, Yiqing
    Li, Jingwei
    Li, Tianmin
    Deng, Xin
    STAR PROTOCOLS, 2023, 4 (02):
  • [44] RNA-seq and ChIP-seq Identification of Unique and Overlapping Targets of GLI Transcription Factors in Melanoma Cell Lines
    Kurtovic, Matea
    Pitesa, Nikolina
    Bartonicek, Nenad
    Ozretic, Petar
    Musani, Vesna
    Conkas, Josipa
    Petric, Tina
    King, Cecile
    Sabol, Maja
    CANCERS, 2022, 14 (18)
  • [45] Determination of long non-coding RNAs associated with EZH2 in neuroblastoma by RIP-seq, RNA-seq and ChIP-seq
    Ye, Mujie
    Xie, Lulu
    Zhang, Jingjing
    Liu, Baihui
    Liu, Xiangqi
    He, Jiajun
    Ma, Duan
    Dong, Kuiran
    ONCOLOGY LETTERS, 2020, 20 (04)
  • [46] ChIP-seq studies unravel novel AR and OGT co-regulated genes in prostate cancer cells
    Poulose, Ninu
    Steele, Rebecca E.
    Maguire, Sarah
    McDade, Simon
    Mills, Ian G.
    CANCER RESEARCH, 2019, 79 (13)
  • [47] CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human
    Qin, Bo
    Zhou, Meng
    Ge, Ying
    Taing, Len
    Liu, Tao
    Wang, Qian
    Wang, Su
    Chen, Junsheng
    Shen, Lingling
    Duan, Xikun
    Hu, Sheng'en
    Li, Wei
    Long, Henry
    Zhang, Yong
    Liu, X. Shirley
    BIOINFORMATICS, 2012, 28 (10) : 1411 - 1412
  • [48] Analysis of paired end Pol II ChIP-seq and short capped RNA-seq in MCF-7 cells
    Scheidegger, Adam
    Burkholder, Adam
    Abbas, Ata
    Zarns, Kris
    Samarakkody, Ann
    Nechaev, Sergei
    GENOMICS DATA, 2015, 5 : 263 - 267
  • [49] Identification of potential target genes of USP22 via ChIP-seq and RNA-seq analysis in HeLa cells
    Gong, Zhen
    Liu, Jianyun
    Xie, Xin
    Xu, Xiaoyuan
    Wu, Ping
    Li, Huimin
    Wang, Yaqin
    Li, Weidong
    Xiong, Jianjun
    GENETICS AND MOLECULAR BIOLOGY, 2018, 41 (02) : 488 - 495
  • [50] RNA-Seq to reveal mitochondrial gene fusions in breast cancer
    Agrawal, Vartika
    Cheung, Yee Him
    Keswarpu, Payal
    Somlo, George
    Abu-Khalaf, Maysa
    Sikov, William M.
    Varadan, Vinay
    Harris, Lyndsay
    Dimitrova, Nevenka
    JOURNAL OF CLINICAL ONCOLOGY, 2017, 35