Chip-Seq and RNA-Seq studies reveal novel insights into the interactive and transcriptomic architecture of the human prostate cancer

被引:0
|
作者
Puto, Lorena A. [1 ]
Benner, Chris [1 ]
Hunter, Tony [1 ]
机构
[1] Salk Inst Biol Studies, La Jolla, CA 92037 USA
关键词
D O I
10.1158/1538-7445.TRANSCAGEN-A1-02
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
A1-02
引用
收藏
页数:2
相关论文
共 50 条
  • [31] Identification of somatic mutations in human prostate cancer by RNA-Seq
    Xu, XiaoLin
    Zhu, KaiChang
    Liu, Feng
    Wang, Yue
    Shen, JianGuo
    Jin, Jizhong
    Wang, Zhong
    Chen, Lin
    Li, Jiadong
    Xu, Min
    GENE, 2013, 519 (02) : 343 - 347
  • [32] Integrative RNA-Seq and H3 Trimethylation ChIP-Seq Analysis of Human Lung Cancer Cells Isolated by Laser-Microdissection
    Ong, Quang
    Sakashita, Shingo
    Hanawa, Emi
    Kaneko, Naomi
    Noguchi, Masayuki
    Muratani, Masafumi
    CANCERS, 2021, 13 (07)
  • [33] Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database
    Fortriede, Joshua D.
    Pells, Troy J.
    Chu, Stanley
    Chaturvedi, Praneet
    Wang, DongZhuo
    Fisher, Malcom E.
    James-Zorn, Christina
    Wang, Ying
    Nenni, Mardi J.
    Burns, Kevin A.
    Lotay, Vaneet S.
    Ponferrada, Virgilio G.
    Karimi, Kamran
    Zorn, Aaron M.
    Vize, Peter D.
    NUCLEIC ACIDS RESEARCH, 2020, 48 (D1) : D776 - D782
  • [34] Raw Sequence to Target Gene Prediction: An Integrated Inference Pipeline for ChIP-Seq and RNA-Seq Datasets
    Wani, Nisar
    Raza, Khalid
    APPLICATIONS OF ARTIFICIAL INTELLIGENCE TECHNIQUES IN ENGINEERING, VOL 2, 2019, 697 : 557 - 568
  • [35] Unipro UGENE NGS pipelines and components for variant calling, RNA-seq and ChIP-seq data analyses
    Golosova, Olga
    Henderson, Ross
    Vaskin, Yuriy
    Gabrielian, Andrei
    Grekhov, German
    Nagarajan, Vijayaraj
    Oler, Andrew J.
    Nones, Mariam Qui
    Hurt, Darrell
    Fursov, Mikhail
    Huyen, Yentram
    PEERJ, 2014, 2
  • [36] Identifying transcriptional targets of vasopressin using combined ChIP-seq and RNA-seq analysis of mpkCCD cells
    Claxton, J'Neka
    Sandoval, Pablo
    Lee, Jae Wook
    Hoffert, Jason
    Knepper, Mark
    FASEB JOURNAL, 2014, 28 (01):
  • [37] Identification of Prostate Cancer LncRNAs by RNA-Seq
    Hu, Cheng-Cheng
    Gan, Ping
    Zhang, Rui-Ying
    Xue, Jin-Xia
    Ran, Long-Ke
    ASIAN PACIFIC JOURNAL OF CANCER PREVENTION, 2014, 15 (21) : 9439 - 9444
  • [38] ChIP-Seq and RNA-Seq Reveal an AmrZ-Mediated Mechanism for Cyclic di-GMP Synthesis and Biofilm Development by Pseudomonas aeruginosa
    Jones, Christopher J.
    Newsom, David
    Kelly, Benjamin
    Irie, Yasuhiko
    Jennings, Laura K.
    Xu, Binjie
    Limoli, Dominique H.
    Harrison, Joe J.
    Parsek, Matthew R.
    White, Peter
    Wozniak, Daniel J.
    PLOS PATHOGENS, 2014, 10 (03)
  • [39] Integrating RNA-seq and ChIP-seq data to characterize long non-coding RNAs in Drosophila melanogaster
    Mei-Ju May Chen
    Li-Kai Chen
    Yu-Shing Lai
    Yu-Yu Lin
    Dung-Chi Wu
    Yi-An Tung
    Kwei-Yan Liu
    Hsueh-Tzu Shih
    Yi-Jyun Chen
    Yan-Liang Lin
    Li-Ting Ma
    Jian-Long Huang
    Po-Chun Wu
    Ming-Yi Hong
    Fang-Hua Chu
    June-Tai Wu
    Wen-Hsiung Li
    Chien-Yu Chen
    BMC Genomics, 17
  • [40] Understanding gene regulatory mechanisms by integrating ChIP-seq and RNA-seq data: statistical solutions to biological problems
    Angelini, Claudia
    Costa, Valerio
    FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2014, 2