Molecular Dynamics Simulations of the Dynamic and Energetic Properties of Alkali and Halide Ions Using Water-Model-Specific Ion Parameters

被引:465
作者
Joung, In Suk [1 ]
Cheatham, Thomas E., III [1 ,2 ,3 ]
机构
[1] Univ Utah, Dept Bioengn, Coll Engn, Salt Lake City, UT 84112 USA
[2] Univ Utah, Dept Med Chem, Coll Pharm, Salt Lake City, UT 84112 USA
[3] Univ Utah, Dept Pharmaceut & Pharmaceut Chem, Coll Pharm, Salt Lake City, UT 84112 USA
关键词
COMPUTER-SIMULATION; AQUEOUS-SOLUTIONS; METAL-IONS; BIOMOLECULAR SIMULATIONS; INTERACTION POTENTIALS; ACTIVITY-COEFFICIENTS; POLARIZABLE WATER; MOBILITY; 25-DEGREES-C; STABILITY;
D O I
10.1021/jp902584c
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The dynamic and energetic properties of the alkali and halide ions were calculated using molecular dynamics (MD) and free energy simulations with various different water and ion force fields including our recently developed water-model-specific ion parameters. The properties calculated were activity coefficients, diffusion coefficients, residence times of atomic pairs, association constants, and Solubility. Through calculation of these properties, we can assess the validity and range of applicability of the simple pair potential models and better understand their limitations. Due to extreme computational demands, the activity coefficients were only calculated for a Subset of the models. The results qualitatively agree with experiment. Calculated diffusion coefficients and residence times between cation-anion, water-cation, and water-anion showed differences depending oil the choice of water and ion force field used. The calculated solubilities of the alkali-halide salts were generally lower than the true solubility of the salts. However, for both the TIP4P(EW) and SPC/E water-model-specific ion parameters. solubility was reasonably well-reproduced. Finally, the correlations among the various properties led to the following Conclusions: (1) The reliability of the ion force fields is significantly affected by the specific choice of water model. (2) Ion-ion interactions are very important to accurately simulate the properties, especially solubility. (3) The SPC/E and TIP4P(EW) water-model-specific ion force fields ire preferred for simulation in high salt environments compared to the other ion force fields.
引用
收藏
页码:13279 / 13290
页数:12
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