Characterization of complete chloroplast genome of Amentotaxus yunnanensis (Taxaceae), a species with extremely small populations in China

被引:3
作者
Ge, Jia [1 ,2 ]
Bi, Guiqi [3 ]
Luo, Guifen [1 ,2 ]
机构
[1] Chinese Acad Sci, Kunming Inst Bot, Yunnan Key Lab Integrat Conservat Plant Species E, Kunming 650201, Yunnan, Peoples R China
[2] Chinese Acad Sci, Kunming Inst Bot, Key Lab Plant Divers & Biogeog East Asia, Kunming, Yunnan, Peoples R China
[3] Chinese Acad Agr Sci, Agr Synthet Biol Ctr, Agr Genom Inst Shenzhen, Shenzhen, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 01期
关键词
Amentotaxus yunnanensis; chloroplast genome; Plant Species with Extremely Small Population (PSESP);
D O I
10.1080/23802359.2019.1607592
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Amentotaxus yunnanensis H. L. Li (Taxaceae) is a threatened plant species and a typical Plant Species with Extremely Small Population (PSESP). In this study, we sequenced the whole chloroplast (cp) genome of A. yunnanensis. The results showed that the plastid genome is 137,594 bp in size. In total, 118 unique genes were annotated, including 83 protein-coding genes, 31 tRNA genes, and four rRNA genes. The phylogenetic tree based on 24 cp genomes of Taxaceae support the close relationships of the genera Amentotaxus and Torreya.
引用
收藏
页码:1765 / 1767
页数:3
相关论文
共 9 条
  • [1] HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching
    Bi, Guiqi
    Mao, Yunxiang
    Xing, Qikun
    Cao, Min
    [J]. GENOMICS, 2018, 110 (01) : 18 - 22
  • [2] NOVOPlasty: de novo assembly of organelle genomes from whole genome data
    Dierckxsens, Nicolas
    Mardulyn, Patrick
    Smits, Guillaume
    [J]. NUCLEIC ACIDS RESEARCH, 2017, 45 (04)
  • [3] Diversity and evolution of leaf anatomical characters in Taxaceae s.l.-fluorescence microscopy reveals new delimitating characters
    Elpe, Christoph
    Knopf, Patrick
    Stutzel, Thomas
    Schulz, Christian
    [J]. JOURNAL OF PLANT RESEARCH, 2018, 131 (01) : 125 - 141
  • [4] PLANN: A COMMAND-LINE APPLICATION FOR ANNOTATING PLASTOME SEQUENCES
    Huang, Daisie I.
    Cronk, Quentin C. B.
    [J]. APPLICATIONS IN PLANT SCIENCES, 2015, 3 (08):
  • [5] IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
    Lam-Tung Nguyen
    Schmidt, Heiko A.
    von Haeseler, Arndt
    Bui Quang Minh
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (01) : 268 - 274
  • [6] The Norway spruce genome sequence and conifer genome evolution
    Nystedt, Bjorn
    Street, Nathaniel R.
    Wetterbom, Anna
    Zuccolo, Andrea
    Lin, Yao-Cheng
    Scofield, Douglas G.
    Vezzi, Francesco
    Delhomme, Nicolas
    Giacomello, Stefania
    Alexeyenko, Andrey
    Vicedomini, Riccardo
    Sahlin, Kristoffer
    Sherwood, Ellen
    Elfstrand, Malin
    Gramzow, Lydia
    Holmberg, Kristina
    Hallman, Jimmie
    Keech, Olivier
    Klasson, Lisa
    Koriabine, Maxim
    Kucukoglu, Melis
    Kaller, Max
    Luthman, Johannes
    Lysholm, Fredrik
    Niittyla, Totte
    Olson, Ake
    Rilakovic, Nemanja
    Ritland, Carol
    Rossello, Josep A.
    Sena, Juliana
    Svensson, Thomas
    Talavera-Lopez, Carlos
    Theissen, Guenter
    Tuominen, Hannele
    Vanneste, Kevin
    Wu, Zhi-Qiang
    Zhang, Bo
    Zerbe, Philipp
    Arvestad, Lars
    Bhalerao, Rishikesh
    Bohlmann, Joerg
    Bousquet, Jean
    Gil, Rosario Garcia
    Hvidsten, Torgeir R.
    de Jong, Pieter
    MacKay, John
    Morgante, Michele
    Ritland, Kermit
    Sundberg, Bjorn
    Thompson, Stacey Lee
    [J]. NATURE, 2013, 497 (7451) : 579 - 584
  • [7] Sun WB., 2013, Conserving plant species with extremely small populations (PSESP) in Yunnan: a practice and exploration, P11
  • [8] Thomas P, 2017, AMENTOTAXUS YUNNANEN, DOI 10.2305/IUCN.UK.2017-2.RLTS.T118076066A96812158.en
  • [9] Automatic annotation of organellar genomes with DOGMA
    Wyman, SK
    Jansen, RK
    Boore, JL
    [J]. BIOINFORMATICS, 2004, 20 (17) : 3252 - 3255