DNA-Mediated Homogeneous Binding Assays for Nucleic Acids and Proteins

被引:374
作者
Zhang, Hongquan [1 ]
Li, Feng [2 ]
Dever, Brittany [2 ]
Li, Xing-Fang [1 ]
Le, X. Chris [1 ,2 ]
机构
[1] Univ Alberta, Dept Lab Med & Pathol, Edmonton, AB T6G 2G3, Canada
[2] Univ Alberta, Dept Chem, Edmonton, AB T6G 2G2, Canada
基金
加拿大自然科学与工程研究理事会; 加拿大健康研究院;
关键词
ROLLING-CIRCLE AMPLIFICATION; RESONANCE ENERGY-TRANSFER; IN-VITRO SELECTION; ENZYMATIC SIGNAL AMPLIFICATION; HIGHLY SENSITIVE DETECTION; PROXIMITY LIGATION ASSAYS; STRAND DISPLACEMENT AMPLIFICATION; SEQUENCE-SPECIFIC DETECTION; MESSENGER-RNA DETECTION; APTAMER-BASED DETECTION;
D O I
10.1021/cr300340p
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Advancements in DNA-mediated homogenous binding assays for nucleic acids and proteins are discussed. Homogeneous assays are attractive because conducting an assay in a single tube reduces time and minimizes contamination-prone steps. Homogeneous binding assays requires accomplishing both target recognition and signal transduction in the solution. Structures of nucleic acids are predictable, making it useful to design nucleic acid probes that change structures upon binding to the target. This binding-induced conformational change, resulting in signal transduction, is represented in molecular beacons and aptamer beacons. Nucleic acids are amplifiable, giving rise to a variety of amplification techniques for highly sensitive detection. Simultaneous detection of multiple targets using homogeneous binding assays requires minimum or no cross-reaction between the multiple affinity ligands and the various targets when the multiple affinity ligands are present in the same test solution.
引用
收藏
页码:2812 / 2841
页数:30
相关论文
共 319 条
  • [31] Rapid DNA detection by beacon-assisted detection amplification
    Connolly, Ashley R.
    Trau, Matt
    [J]. NATURE PROTOCOLS, 2011, 6 (06) : 772 - 778
  • [32] Isothermal Detection of DNA by Beacon-Assisted Detection Amplification
    Connolly, Ashley R.
    Trau, Matt
    [J]. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2010, 49 (15) : 2720 - 2723
  • [33] Analysis of Genes, Transcripts, and Proteins via DNA Ligation
    Conze, Tim
    Shetye, Alysha
    Tanaka, Yuki
    Gu, Jijuan
    Larsson, Chatarina
    Goeransson, Jenny
    Tavoosidana, Gholamreza
    Soederberg, Ola
    Nilsson, Mats
    Landegren, Ulf
    [J]. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY, 2009, 2 : 215 - 239
  • [34] A universal platform for sensitive and selective colorimetric DNA detection based on Exo III assisted signal amplification
    Cui, Liang
    Ke, Guoliang
    Zhang, Wei Yun
    Yang, Chaoyong James
    [J]. BIOSENSORS & BIOELECTRONICS, 2011, 26 (05) : 2796 - 2800
  • [35] A cyclic enzymatic amplification method for sensitive and selective detection of nucleic acids
    Cui, Liang
    Ke, Guoliang
    Wang, Chunming
    Yang, Chaoyong James
    [J]. ANALYST, 2010, 135 (08) : 2069 - 2073
  • [36] Visual detection of DNA from salmonella and mycobacterium using split DNAzymes
    Darius, Aw Kang Lie
    Ling, Neo Jia
    Mahesh, Uttamchandani
    [J]. MOLECULAR BIOSYSTEMS, 2010, 6 (05) : 792 - 794
  • [37] ProteinSeq: High-Performance Proteomic Analyses by Proximity Ligation and Next Generation Sequencing
    Darmanis, Spyros
    Nong, Rachel Yuan
    Vanelid, Johan
    Siegbahn, Agneta
    Ericsson, Olle
    Fredriksson, Simon
    Backlin, Christofer
    Gut, Marta
    Heath, Simon
    Gut, Ivo Glynne
    Wallentin, Lars
    Gustafsson, Mats G.
    Kamali-Moghaddam, Masood
    Landegren, Ulf
    [J]. PLOS ONE, 2011, 6 (09):
  • [38] Highly effective colorimetric and visual detection of nucleic acids using an asymmetrically split peroxidase DNAzyme
    Deng, Minggang
    Zhang, Dan
    Zhou, Yangyang
    Zhou, Xiang
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (39) : 13095 - 13102
  • [39] Proximity extension of circular DNA aptamers with real-time protein detection
    Di Giusto, DA
    Wlassoff, WA
    Gooding, JJ
    Messerle, BA
    King, GC
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 (06) : 1 - 7
  • [40] Fluorescence Detection of Telomerase Activity in Cancer Cells Based on Isothermal Circular Strand-Displacement Polymerization Reaction
    Ding, Caifeng
    Li, Xiangling
    Ge, Ying
    Zhang, Shusheng
    [J]. ANALYTICAL CHEMISTRY, 2010, 82 (07) : 2850 - 2855