Genomics and transcriptomics to protect rice (Oryza sativa. L.) from abiotic stressors: -pathways to achieving zero hunger

被引:12
作者
Ahmad, Mushtaq [1 ]
机构
[1] Univ Nebraska, Plant Sci, Lincoln, NE 68588 USA
来源
FRONTIERS IN PLANT SCIENCE | 2022年 / 13卷
关键词
rice (Oryza sativa; L; abiotic stress; adaptability; gene; genomics; transcriptomics; COMPREHENSIVE EXPRESSION ANALYSIS; INTEGRATED RNA-SEQ; HEAT-SHOCK FACTORS; GENE-EXPRESSION; WIDE ANALYSIS; ZINC-FINGER; SUBMERGENCE TOLERANCE; FUNCTIONAL GENOMICS; ENHANCED TOLERANCE; DROUGHT TOLERANCE;
D O I
10.3389/fpls.2022.1002596
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
More over half of the world's population depends on rice as a major food crop. Rice (Oryza sativa L.) is vulnerable to abiotic challenges including drought, cold, and salinity since it grown in semi-aquatic, tropical, or subtropical settings. Abiotic stress resistance has bred into rice plants since the earliest rice cultivation techniques. Prior to the discovery of the genome, abiotic stress-related genes were identified using forward genetic methods, and abiotic stress-tolerant lines have developed using traditional breeding methods. Dynamic transcriptome expression represents the degree of gene expression in a specific cell, tissue, or organ of an individual organism at a specific point in its growth and development. Transcriptomics can reveal the expression at the entire genome level during stressful conditions from the entire transcriptional level, which can be helpful in understanding the intricate regulatory network relating to the stress tolerance and adaptability of plants. Rice (Oryza sativa L.) gene families found comparatively using the reference genome sequences of other plant species, allowing for genome-wide identification. Transcriptomics via gene expression profiling which have recently dominated by RNA-seq complements genomic techniques. The identification of numerous important qtl,s genes, promoter elements, transcription factors and miRNAs involved in rice response to abiotic stress was made possible by all of these genomic and transcriptomic techniques. The use of several genomes and transcriptome methodologies to comprehend rice (Oryza sativa, L.) ability to withstand abiotic stress have been discussed in this review
引用
收藏
页数:26
相关论文
共 204 条
  • [91] The Phytocyanin Gene Family in Rice (Oryza sativa L.): Genome-Wide Identification, Classification and Transcriptional Analysis
    Ma, Haoli
    Zhao, Heming
    Liu, Zhi
    Zhao, Jie
    [J]. PLOS ONE, 2011, 6 (10):
  • [92] Genome-wide identification, classification, and expression analysis of the arabinogalactan protein gene family in rice (Oryza sativa L.)
    Ma, Haoli
    Zhao, Jie
    [J]. JOURNAL OF EXPERIMENTAL BOTANY, 2010, 61 (10) : 2647 - 2668
  • [93] Contribution of Genomics to Gene Discovery in Plant Abiotic Stress Responses
    Ma, Yun
    Qin, Feng
    Lam-Son Phan Tran
    [J]. MOLECULAR PLANT, 2012, 5 (06) : 1176 - 1178
  • [94] Transcriptome Analysis of Oryza sativa (Rice) Seed Germination at High Temperature Shows Dynamics of Genome Expression Associated with Hormones Signalling and Abiotic Stress Pathways
    Mangrauthia, Satendra Kumar
    Agarwal, Surekha
    Sailaja, B.
    Sarla, N.
    Voleti, S. R.
    [J]. TROPICAL PLANT BIOLOGY, 2016, 9 (04) : 215 - 228
  • [95] Rice SNP-seek database update: new SNPs, indels, and queries
    Mansueto, Locedie
    Rommel Fuentes, Roven
    Nikki Borja, Frances
    Detras, Jeffery
    Miguel Abriol-Santos, Juan
    Chebotarov, Dmytro
    Sanciangco, Millicent
    Palis, Kevin
    Copetti, Dario
    Poliakov, Alexandre
    Dubchak, Inna
    Solovyev, Victor
    Wing, Rod A.
    Sackville Hamilton, Ruaraidh
    Mauleon, Ramil
    McNally, Kenneth L.
    Alexandrov, Nickolai
    [J]. NUCLEIC ACIDS RESEARCH, 2017, 45 (D1) : D1075 - D1081
  • [96] RiceRelativesGD: a genomic database of rice relatives for rice research
    Mao, Lingfeng
    Chen, Meihong
    Chu, Qinjie
    Jia, Lei
    Sultana, Most Humaira
    Wu, Dongya
    Kong, Xiangdong
    Qiu, Jie
    Ye, Chu-Yu
    Zhu, Qian-Hao
    Chen, Xi
    Fan, Longjiang
    [J]. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2019,
  • [97] Identification of Cis-Acting Promoter Elements in Cold- and Dehydration-Induced Transcriptional Pathways in Arabidopsis, Rice, and Soybean
    Maruyama, Kyonoshin
    Todaka, Daisuke
    Mizoi, Junya
    Yoshida, Takuya
    Kidokoro, Satoshi
    Matsukura, Satoko
    Takasaki, Hironori
    Sakurai, Tetsuya
    Yamamoto, Yoshiharu Y.
    Yoshiwara, Kyouko
    Kojima, Mikiko
    Sakakibara, Hitoshi
    Shinozaki, Kazuo
    Yamaguchi-Shinozaki, Kazuko
    [J]. DNA RESEARCH, 2012, 19 (01) : 37 - 49
  • [98] Genome-wide analysis and expression profiling of half-size ABC protein subgroup G in rice in response to abiotic stress and phytohormone treatments
    Matsuda, Shuichi
    Funabiki, Atsushi
    Furukawa, Kaoru
    Komori, Nozomi
    Koike, Masanori
    Tokuji, Yoshihiko
    Takamure, Itsuro
    Kato, Kiyoaki
    [J]. MOLECULAR GENETICS AND GENOMICS, 2012, 287 (10) : 819 - 835
  • [99] RNA-directed DNA methylation: an epigenetic pathway of increasing complexity
    Matzke, Marjori A.
    Mosher, Rebecca A.
    [J]. NATURE REVIEWS GENETICS, 2014, 15 (06) : 394 - 408
  • [100] MicroRNA-mediated signaling involved in plant root development
    Meng, Yijun
    Ma, Xiaoxia
    Chen, Dijun
    Wu, Ping
    Chen, Ming
    [J]. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2010, 393 (03) : 345 - 349