Facilitating the Analysis of Immunological Data with Visual Analytic Techniques

被引:6
|
作者
Shih, David C. [1 ,2 ]
Ho, Kevin C. [1 ]
Melnick, Kyle M. [3 ]
Rensink, Ronald A. [2 ,3 ]
Kollmann, Tobias R. [1 ]
Fortuno, Edgardo S. [1 ]
机构
[1] Univ British Columbia, Child & Family Res Inst, Div Infect & Immunol Dis, Dept Paediat, Vancouver, BC V5Z 1M9, Canada
[2] Univ British Columbia, Dept Comp Sci, Vancouver, BC V5Z 1M9, Canada
[3] Univ British Columbia, Dept Psychol, Vancouver, BC V5Z 1M9, Canada
来源
JOVE-JOURNAL OF VISUALIZED EXPERIMENTS | 2011年 / 47期
关键词
Immunology; Issue; 47; Visual analytics; flow cytometry; Luminex; Tableau; cytokine; innate immunity; single nucleotide polymorphism;
D O I
10.3791/2397
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Visual analytics (VA) has emerged as a new way to analyze large dataset through interactive visual display. We demonstrated the utility and the flexibility of a VA approach in the analysis of biological datasets. Examples of these datasets in immunology include flow cytometry, Luminex data, and genotyping (e.g., single nucleotide polymorphism) data. Contrary to the traditional information visualization approach, VA restores the analysis power in the hands of analyst by allowing the analyst to engage in real-time data exploration process. We selected the VA software called Tableau after evaluating several VA tools. Two types of analysis tasks analysis within and between datasets were demonstrated in the video presentation using an approach called paired analysis. Paired analysis, as defined in VA, is an analysis approach in which a VA tool expert works side-by-side with a domain expert during the analysis. The domain expert is the one who understands the significance of the data, and asks the questions that the collected data might address. The tool expert then creates visualizations to help find patterns in the data that might answer these questions. The short lag-time between the hypothesis generation and the rapid visual display of the data is the main advantage of a VA approach.
引用
收藏
页数:6
相关论文
共 50 条
  • [31] Data Type Agnostic Visual Sensitivity Analysis
    Piccolotto, Nikolaus
    Boegl, Markus
    Muehlmann, Christoph
    Nordhausen, Klaus
    Filzmoser, Peter
    Schmidt, Johanna
    Miksch, Silvia
    IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS, 2024, 30 (01) : 1106 - 1116
  • [32] Analysis of Mining, Visual Analytics Tools and Techniques in Space and Time
    Nandhini, K.
    Shanthi, I. Elizabeth
    PROCEEDINGS OF THE SECOND INTERNATIONAL CONFERENCE ON COMPUTER AND COMMUNICATION TECHNOLOGIES, IC3T 2015, VOL 2, 2016, 380 : 547 - 556
  • [33] Visual Causality Analysis of Event Sequence Data
    Jin, Zhuochen
    Guo, Shunan
    Chen, Nan
    Weiskopf, Daniel
    Gotz, David
    Cao, Nan
    IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS, 2021, 27 (02) : 1343 - 1352
  • [34] Collaborative Synthesis of Visual Analytic Results
    Robinson, Anthony C.
    IEEE SYMPOSIUM ON VISUAL ANALYTICS SCIENCE AND TECHNOLOGY 2008, PROCEEDINGS, 2008, : 67 - 74
  • [35] Interactive visual synthesis of analytic knowledge
    Gotz, David
    Zhou, Michelle X.
    Aggarwal, Vikram
    VAST 2006: IEEE SYMPOSIUM ON VISUAL ANALYTICS SCIENCE AND TECHNOLOGY, PROCEEDINGS, 2006, : 51 - +
  • [36] Grand Challenge Award 2008: Support for Diverse Analytic Techniques-nSpace2 and GeoTime Visual Analytics
    Chien, Lynn
    Tat, Annie
    Proulx, Pascale
    Khamisa, Adeel
    Wright, William
    IEEE SYMPOSIUM ON VISUAL ANALYTICS SCIENCE AND TECHNOLOGY 2008, PROCEEDINGS, 2008, : 199 - 200
  • [37] CrowdAnalyzer: A Collaborative Visual Analytic System
    Wei, Shuang
    Hu, Kai
    Cheng, Longjie
    Tang, Hui
    Du, Weidan
    Guo, Chen
    Pan, Chao
    Li, Mingran
    Yu, Bing
    Li, Xinzhe
    Chen, YingJie Victor
    Qian, Zhenyu Cherly
    Zhu, Yu Michael
    2015 IEEE CONFERENCE ON VISUAL ANALYTICS SCIENCE AND TECHNOLOGY, 2015, : 177 - 178
  • [38] Visual analysis of oceanic data for marine ecosystems
    Kumar, Vegu Shree Rama Kamal
    Brooks, Stephen
    ECOLOGICAL INFORMATICS, 2024, 82
  • [39] Analysis guided visual exploration of multivariate data
    Yang, Di
    Rundensteiner, Elke A.
    Ward, Matthew O.
    VAST: IEEE SYMPOSIUM ON VISUAL ANALYTICS SCIENCE AND TECHNOLOGY 2007, PROCEEDINGS, 2007, : 83 - 90
  • [40] CovidEmoVis - An Interactive Visual Analytic Tool for Exploring Emotions from Twitter Data of Covid-19
    Laura-Ochoa, Leticia
    Tejada-Toledo, Franco
    HUMAN-COMPUTER INTERACTION, HCI-COLLAB 2020, 2020, 1334 : 94 - 106