The magma source, petrogenesis, tectonic setting and its geochronology of the Middle-Late Paleozoic felsic volcanic rocks, which widely exposed in the Zhaheba area, East Junggar, remain not restriction well so far. A better understanding of these issues above will help us to reveal the magmatic processes and the continental growth of Central Asia. The field investigation showed significant structural characteristic with NE-SW trending compression and the Batamayineishan Formation is represented by typical basic and intermediate-felsic volcanic rocks and pyroclastic rocks. This paper reports zircon SHRIMP U-Pb age, whole-rock geochemistry and zircon Hf isotope analysis results from the Yundukala rhyolite, East Junggar. Three zircon SHRIMP U-Pb ages indicate that the rhyolite in the Yundukala area were formed at 276.0 similar to 279.8Ma. The rhyolites are rich in silica (SiO2 = 60.61% similar to 78.07%), alkali (K2O + Na2O = 6.46% similar to 9.28%) and have high Fe2O3T (0.70% similar to 3.30%) contents and Ga/Al ratios, low CaO (0.18% similar to 2.79%) and MgO (0.13% similar to 1.31%) contents, and it is a typical high-medium-K calc-alkaline A-type rhyolite with character of enrichment of LREE and HSFE (Zr, Hf) and depletion of Ba, Sr, Eu, Nb and Ta. They have high values of epsilon(Hf) (t) (10.3 similar to 14.6) and young crustal model ages (348 similar to 557Ma), suggesting that they were generated by partial melting of juvenile lower crust. Integrating regional geological data of the eastern Junggar and previous research on the nearest ophiolite belt, it is concluded that the Yundukala region was in an extensional setting in the Early Permian and the rhyofites may be the products of felsic magma during its ascend and emplacement processes when upwelling asthenosphere triggered partial melting of juvenile lower crust in an arc-arc or arc-continent post-collisional extensional setting, indicating that the vertical growth play an important role in the continental crust of Central Asia in the Early Permian.