Are the Sublimation Thermodynamics of Organic Molecules Predictable?

被引:29
作者
McDonagh, James L. [1 ,3 ]
Palmer, David S. [2 ]
van Mourik, Tanja [3 ]
Mitchell, John B. O. [3 ]
机构
[1] Univ Manchester, Manchester Inst Biotechnol, 131 Princess St, Manchester M1 7DN, Lancs, England
[2] Univ Strathclyde, Dept Pure & Appl Chem, Thomas Graham Bldg,295 Cathedral St, Glasgow G1 1XL, Lanark, Scotland
[3] Univ St Andrews, Sch Chem, St Andrews KY16 9ST, Fife, Scotland
基金
英国工程与自然科学研究理事会;
关键词
STANDARD MOLAR ENTHALPIES; CRYSTAL-LATTICE ENERGY; AQUEOUS SOLUBILITY PREDICTION; VAPOR-PRESSURES; MELTING-POINT; STRUCTURAL ASPECTS; DRUG MOLECULES; RANDOM FOREST; BENZOIC-ACID; SOLVATION;
D O I
10.1021/acs.jcim.6b00033
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
We compare a range of computational methods for the prediction of sublimation thermodynamics (enthalpy, entropy, and free energy of sublimation). These include a model from theoretical chemistry that utilizes crystal lattice energy minimization (with the DMACRYS program) and quantitative structure property relationship (QSPR) models generated by both machine learning (random forest and support vector machines) and regression (partial least squares) methods. Using these methods we investigate the predictability of the enthalpy, entropy and free energy of sublimation, with consideration of whether such a method may be able to improve solubility prediction schemes. Previous work has suggested that the major source of error in solubility prediction schemes involving a thermodynamic cycle via the solid state is in the modeling of the free energy change away from the solid state. Yet contrary to this conclusion other work has found that the inclusion of terms such as the enthalpy of sublimation in QSPR methods does not improve the predictions of solubility. We suggest the use of theoretical chemistry terms, detailed explicitly in the Methods section, as descriptors for the prediction of the enthalpy and free energy of sublimation. A data set of 158 molecules with experimental sublimation thermodynamics values and some CSD refcodes has been collected from the literature and is provided with their original source references.
引用
收藏
页码:2162 / 2179
页数:18
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