The complete mitochondrial genome ofHexagrammos agrammus(Scorpaeniformes: Hexagrammidae) by next-generation sequencing

被引:1
作者
Ji, Dongping [1 ]
Liang, Jun [2 ]
Li, Pengfei [2 ]
Gao, Tianxiang [2 ,3 ]
Xu, Shengyong [3 ]
机构
[1] Agr Machinery Serv Ctr Fangchenggang, Fangchenggang, Guangxi, Peoples R China
[2] Key Lab Sustainable Utilizat Technol Res Fishery, Zhoushan, Zhejiang, Peoples R China
[3] Zhejiang Ocean Univ, Fishery Coll, Zhoushan, Zhejiang, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 03期
基金
中国国家自然科学基金;
关键词
Hexagrammidae; mitogenome; Hexagrammos agrammus; next-generation sequencing;
D O I
10.1080/23802359.2020.1780971
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The complete mitochondrial genome of theHexagrammos agrammusis presented in this study. The mitochondrial genome is 16,512 bp long and consists of 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and a control region. The gene order and composition were similar to those of most other vertebrates. The nucleotide compositions of the heavy strand are 17.27% of G, 26.10% of T, 26.85% of A, and 29.78% of C. With the exception of the NADH dehydrogenase subunit 6 (ND6) and 8 tRNA genes, all other mitochondrial genes are encoded on the heavy strand. The phylogenetic analysis by neighbour-joining (NJ) method showed thatH. agrammushas the closer relationship withHexagrammos otakiiandHexagrammos lagocephalusin the phylogenetic relationship.
引用
收藏
页码:2509 / 2511
页数:3
相关论文
共 15 条
[1]   MITOS: Improved de novo metazoan mitochondrial genome annotation [J].
Bernt, Matthias ;
Donath, Alexander ;
Juehling, Frank ;
Externbrink, Fabian ;
Florentz, Catherine ;
Fritzsch, Guido ;
Puetz, Joern ;
Middendorf, Martin ;
Stadler, Peter F. .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 69 (02) :313-319
[2]   The complete mitochondrial genome of Chinese sucker Myxocyprinus asiaticus (Cypriniformes, Catostomidae) [J].
Chen, I-Shiung .
MITOCHONDRIAL DNA, 2013, 24 (06) :680-682
[3]  
Cheng-shan WANG., 2008, Southern Power System Technology, V2, P1
[4]   Complete mitochondrial genome of Sicyopterus japonicus (Perciformes, Gobiidae) [J].
Chiang, Tzen-Yuh ;
Chen, I-Shiung ;
Lin, Hung-Du ;
Chang, Wen-Been ;
Ju, Yu-Min .
MITOCHONDRIAL DNA, 2013, 24 (03) :191-193
[5]   Molecular phylogeny of the hexagrammid fishes using a multi-locus approach [J].
Crow, KD ;
Kanamoto, Z ;
Bernardi, G .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2004, 32 (03) :986-997
[6]   The complete mitochondrial genome of the large yellow croaker, Larimichthys crocea (Perciformes, Sciaenidae): Unusual features of its control region and the phylogenetic position of the Sciaenidae [J].
Cui, Zhaoxia ;
Liu, Yuan ;
Li, Chi Pang ;
You, Feng ;
Chu, Ka Hou .
GENE, 2009, 432 (1-2) :33-43
[7]   NOVOPlasty: de novo assembly of organelle genomes from whole genome data [J].
Dierckxsens, Nicolas ;
Mardulyn, Patrick ;
Smits, Guillaume .
NUCLEIC ACIDS RESEARCH, 2017, 45 (04)
[8]   Whole-genome shotgun sequencing of mitochondria from ancient hair shafts [J].
Gilbert, M. Thomas P. ;
Tomsho, Lynn P. ;
Rendulic, Snjezana ;
Packard, Michael ;
Drautz, Daniela I. ;
Sher, Andrei ;
Tikhonov, Alexei ;
Dalen, Love ;
Kuznetsova, Tatyana ;
Kosintsev, Pavel ;
Campos, Paula F. ;
Higham, Thomas ;
Collins, Matthew J. ;
Wilson, Andrew S. ;
Shidlovskiy, Fyodor ;
Buigues, Bernard ;
Ericson, Per G. P. ;
Germonpre, Mietje ;
Goetherstroem, Anders ;
Iacumin, Paola ;
Nikolaev, Vladimir ;
Nowak-Kemp, Malgosia ;
Willerslev, Eske ;
Knight, James R. ;
Irzyk, Gerard P. ;
Perbost, Clotilde S. ;
Fredrikson, Karin M. ;
Harkins, Timothy T. ;
Sheridan, Sharon ;
Miller, Webb ;
Schuster, Stephan C. .
SCIENCE, 2007, 317 (5846) :1927-1930
[9]   MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline [J].
Iwasaki, Wataru ;
Fukunaga, Tsukasa ;
Isagozawa, Ryota ;
Yamada, Koichiro ;
Maeda, Yasunobu ;
Satoh, Takashi P. ;
Sado, Tetsuya ;
Mabuchi, Kohji ;
Takeshima, Hirohiko ;
Miya, Masaki ;
Nishida, Mutsumi .
MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (11) :2531-2540
[10]  
KANAMOTO Z, 1979, Japanese Journal of Ecology, V29, P171