Temperatures beyond the community optimum promote the dominance of heat-adapted, fast growing and stress resistant bacteria in alpine soils

被引:56
作者
Donhauser, Jonathan [1 ]
Niklaus, Pascal A. [2 ]
Rousk, Johannes [3 ]
Larose, Catherine [4 ]
Frey, Beat [1 ]
机构
[1] Swiss Fed Res Inst WSL, Rhizosphere Proc Grp, Zurcherstr 111, CH-8903 Birmensdorf, Switzerland
[2] Univ Zurich, Dept Evolutionary Biol & Environm Studies, Winterthurerstr 190, CH-8057 Zurich, Switzerland
[3] Lund Univ, Dept Biol, Sect Microbial Ecol, Solvegatan 37, Lund, Sweden
[4] Univ Lyon, Lab Ampere, Ecole Cent Lyon, Environm Microbial Genom, 36 Ave Guy de Collongue, F-69134 Ecully, France
关键词
Global warming; Alpine; Microbiome; Temperature adaptation; Bacterial growth rates; Laboratory warming experiment; SP-NOV; RIBOSOMAL-RNA; MICROBIAL COMMUNITIES; GROWTH-RATE; ADAPTATION; RESPONSES; RESPIRATION; NITROGEN; TUNDRA; MINERALIZATION;
D O I
10.1016/j.soilbio.2020.107873
中图分类号
S15 [土壤学];
学科分类号
0903 ; 090301 ;
摘要
Alpine soils are warming strongly, leading to profound alterations in carbon cycling and greenhouse gas budgets, mediated via the soil microbiome. To explore microbial responses to global warming, we incubated eight alpine soils between 4 and 35 degrees C and linked the temperature dependency of bacterial growth with alterations in community structures and the identification of temperature sensitive taxa. The temperature optimum for bacterial growth was between 27 and 30 degrees C and was higher in soils from warmer environments. This temperature framing the upper limit of naturally occurring temperatures was a tipping point above which the temperature range for growth shifted towards higher temperatures together with pronounced changes in community structures and diversity based on both 16S rRNA gene and transcript sequencing. For instance, at the highest temperature, we observed a strong increase in OTUs affiliated with Burkholderia-Paraburkholderia, Phenylobacterium, Pseudolabrys, Edaphobacter and Sphingomonas. Dominance at high temperature was explained by a priori adaptation to high temperature, high growth potential as well as stress resistance. At the highest temperature, we moreover observed an overall increase in copiotrophic properties in the community along with high growth rates. Further, temperature effects on community structures depended on the long-term climatic legacy of the soils. These findings contribute to extrapolating from single to multiple sites across a large range of conditions.
引用
收藏
页数:16
相关论文
共 119 条
[91]   Soil microbial community structure and function relationships: A heat stress experiment [J].
Riah-Anglet, Wassila ;
Trinsoutrot-Gattin, Isabelle ;
Martin-Laurent, Fabrice ;
Laroche-Ajzenberg, Emilie ;
Norini, Marie-Paule ;
Latour, Xavier ;
Laval, Karine .
APPLIED SOIL ECOLOGY, 2015, 86 :121-130
[92]   Vertical distribution of the soil microbiota along a successional gradient in a glacier forefield [J].
Rime, Thomas ;
Hartmann, Martin ;
Brunner, Ivano ;
Widmer, Franco ;
Zeyer, Josef ;
Frey, Beat .
MOLECULAR ECOLOGY, 2015, 24 (05) :1091-1108
[93]   Long-term warming of a subarctic heath decreases soil bacterial community growth but has no effects on its temperature adaptation [J].
Rinnan, Riikka ;
Michelsen, Anders ;
Baath, Erland .
APPLIED SOIL ECOLOGY, 2011, 47 (03) :217-220
[94]   Temperature adaptation of soil bacterial communities along an Antarctic climate gradient: predicting responses to climate warming [J].
Rinnan, Riikka ;
Rousk, Johannes ;
Yergeau, Etienne ;
Kowalchuk, George A. ;
Baath, Erland .
GLOBAL CHANGE BIOLOGY, 2009, 15 (11) :2615-2625
[95]  
Roller BRK, 2016, NAT MICROBIOL, V1, DOI [10.1038/NMICROBIOL.2016.160, 10.1038/nmicrobiol.2016.160]
[96]   The physiology and ecological implications of efficient growth [J].
Roller, Benjamin R. K. ;
Schmidt, Thomas M. .
ISME JOURNAL, 2015, 9 (07) :1481-1487
[97]  
Ron E.Z., 2013, PROKARYOTES PROKARYO, P589, DOI [10.1007/978-3-642-30141-4_79, DOI 10.1007/978-3-642-30141-4_79]
[98]   Some comments on Huang, L (2010). Growth kinetics of Escherichia coli O157: H7 in mechanically-tenderized beef. International Journal of Food Microbiology, 140: 40-48 [J].
Ross, T. ;
Olley, J. ;
McMeekin, T. A. ;
Ratkowsky, D. A. .
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 2011, 147 (01) :78-80
[99]   From hairballs to hypotheses-biological insights from microbial networks [J].
Rottjers, Lisa ;
Faust, Karoline .
FEMS MICROBIOLOGY REVIEWS, 2018, 42 (06) :761-780
[100]   Temperature adaptation of bacterial communities in experimentally warmed forest soils [J].
Rousk, Johannes ;
Frey, Serita D. ;
Baath, Erland .
GLOBAL CHANGE BIOLOGY, 2012, 18 (10) :3252-3258