The Molecular Mechanism Underlying Mechanical Anisotropy of the Protein GB1

被引:27
|
作者
Li, Yongnan Devin [1 ]
Lamour, Guillaume [1 ,2 ]
Gsponer, Joerg [2 ]
Zheng, Peng [1 ]
Li, Hongbin [1 ]
机构
[1] Univ British Columbia, Dept Chem, Vancouver, BC, Canada
[2] Univ British Columbia, Ctr High Throughput Biol, Vancouver, BC, Canada
基金
加拿大自然科学与工程研究理事会; 加拿大创新基金会;
关键词
IMMUNOGLOBULIN-BINDING DOMAIN; FORCE SPECTROSCOPY REVEALS; SINGLE PROTEIN; DYNAMICS SIMULATIONS; ELASTOMERIC PROTEIN; METAL CHELATION; STABILITY; TITIN; POLYPROTEINS; ELASTICITY;
D O I
10.1016/j.bpj.2012.10.035
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Mechanical responses of elastic proteins are crucial for their biological function and nanotechnological use. Loading direction has been identified as one key determinant for the mechanical responses of proteins. However, it is not clear how a change in pulling direction changes the mechanical unfolding mechanism of the protein. Here, we combine protein engineering, single-molecule force spectroscopy, and steered molecular dynamics simulations to systematically investigate the mechanical response of a small globular protein GB1. Force versus extension profiles from both experiments and simulations reveal marked mechanical anisotropy of GB1. Using native contact analysis, we relate the mechanically robust shearing geometry with concurrent rupture of native contacts. This clearly contrasts the sequential rupture observed in simulations for the mechanically labile peeling geometry. Moreover, we identify multiple distinct mechanical unfolding pathways in two loading directions. Implications of such diverse unfolding mechanisms are discussed. Our results may also provide some insights for designing elastomeric proteins with tailored mechanical properties.
引用
收藏
页码:2361 / 2368
页数:8
相关论文
共 50 条
  • [21] Insights into conformation and dynamics of protein GB1 during folding and unfolding by NMR
    Ding, KY
    Louis, JM
    Gronenborn, AM
    JOURNAL OF MOLECULAR BIOLOGY, 2004, 335 (05) : 1299 - 1307
  • [22] The unfolded ensemble and folding mechanism of the C-terminal GB1 β-hairpin
    Bonomi, Massimiliano
    Branduardi, Davide
    Gervasio, Francesco L.
    Parrinello, Michele
    Journal of the American Chemical Society, 2008, 130 (42): : 13938 - 13944
  • [23] Identifying the intermediates during the folding/unfolding of protein GB1 with MD simulations
    Xiaomin Wu
    Gang Yang
    Lijun Zhou
    Theoretical Chemistry Accounts, 2012, 131
  • [24] A protein contortionist: Core mutations of GB1 that induce dimerization and domain swapping
    Byeon, IJL
    Louis, JM
    Gronenborn, AM
    JOURNAL OF MOLECULAR BIOLOGY, 2003, 333 (01) : 141 - 152
  • [25] Identifying the intermediates during the folding/unfolding of protein GB1 with MD simulations
    Wu, Xiaomin
    Yang, Gang
    Zhou, Lijun
    THEORETICAL CHEMISTRY ACCOUNTS, 2012, 131 (05)
  • [26] Different potential of mean force of two-state protein GB1 and downhill protein gpW revealed by molecular dynamics simulation
    Zhang, Xiaofeng
    Guo, Zilong
    Yu, Ping
    Li, Qiushi
    Zhou, Xin
    Chen, Hu
    CHINESE PHYSICS B, 2020, 29 (07)
  • [27] Different potential of mean force of two-state protein GB1 and downhill protein gpW revealed by molecular dynamics simulation
    张晓峰
    郭子龙
    余平
    李秋实
    周昕
    陈虎
    Chinese Physics B, 2020, (07) : 121 - 125
  • [28] Atomistic simulation of the coupled adsorption and unfolding of protein GB1 on the polystyrenes nanoparticle surface
    HuiFang Xiao
    Bin Huang
    Ge Yao
    WenBin Kang
    Sheng Gong
    Hai Pan
    Yi Cao
    Jun Wang
    Jian Zhang
    Wei Wang
    Science China Physics, Mechanics & Astronomy, 2018, 61
  • [29] Simulated Force Quench Dynamics Shows GB1 Protein Is Not a Two State Folder
    Berkovich, Ronen
    Mondal, Jagannath
    Paster, Inga
    Berne, B. J.
    JOURNAL OF PHYSICAL CHEMISTRY B, 2017, 121 (20): : 5162 - 5173
  • [30] Single Molecule Force Spectroscopy Reveals Critical Roles of Hydrophobic Core Packing in Determining the Mechanical Stability of Protein GB1
    Bu, Tianjia
    Wang, Hui-Chuan Eileen
    Li, Hongbin
    LANGMUIR, 2012, 28 (33) : 12319 - 12325