Automated MAD and MIR structure solution

被引:3198
作者
Terwilliger, TC
Berendzen, J
机构
[1] Los Alamos Natl Lab, Struct Biol Grp, Los Alamos, NM 87545 USA
[2] Los Alamos Natl Lab, Biophys Grp, Los Alamos, NM 87545 USA
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 1999年 / 55卷
关键词
D O I
10.1107/S0907444999000839
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Obtaining an electron-density map from X-ray diffraction data can be difficult and time-consuming even after the data have been collected, largely because MIR and MAD structure determinations currently require many subjective evaluations of the qualities of trial heavy-atom partial structures before a correct heavy-atom solution is obtained. A set of criteria for evaluating the quality of heavy-atom partial solutions in macromolecular crystallography have been developed. These have allowed the conversion of the crystal structure-solution process into an optimization problem and have allowed its automation. The SOLVE software has been used to solve MAD data sets with as many as 52 selenium sites in the asymmetric unit. The automated structure-solution process developed is a major step towards the fully automated structure-determination, model-building and procedure which is needed for genomic scale determinations.
引用
收藏
页码:849 / 861
页数:13
相关论文
共 37 条
  • [1] STRUCTURE AT 2.8-ANGSTROM RESOLUTION OF F1-ATPASE FROM BOVINE HEART-MITOCHONDRIA
    ABRAHAMS, JP
    LESLIE, AGW
    LUTTER, R
    WALKER, JE
    [J]. NATURE, 1994, 370 (6491) : 621 - 628
  • [2] *AM TYP CULT COLL, 1992, CAT BACT BACT, P271
  • [3] [Anonymous], 1970, CONT CRYSTALLOGRAPHY
  • [4] THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY
    BAILEY, S
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 : 760 - 763
  • [5] PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES
    BERNSTEIN, FC
    KOETZLE, TF
    WILLIAMS, GJB
    MEYER, EF
    BRICE, MD
    RODGERS, JR
    KENNARD, O
    SHIMANOUCHI, T
    TASUMI, M
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) : 535 - 542
  • [6] BLUNDELL TL, 1976, PROTEIN CRYSTALLOGRA, P368
  • [7] USING GENETIC ALGORITHMS FOR SOLVING HEAVY-ATOM SITES
    CHANG, G
    LEWIS, M
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 : 667 - 674
  • [8] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods
    delaFortelle, E
    Bricogne, G
    [J]. MACROMOLECULAR CRYSTALLOGRAPHY, PT A, 1997, 276 : 472 - 494
  • [9] CRYSTAL STRUCTURE OF MYOGLOBIN - PHASE DETERMINATION TO A RESOLUTION OF 2A BY METHOD OF ISOMORPHOUS REPLACEMENT
    DICKERSON, R
    KENDREW, JC
    STRANDBERG, BE
    [J]. ACTA CRYSTALLOGRAPHICA, 1961, 14 (11): : 1188 - &
  • [10] PHASES-95: A program package for processing and analyzing diffraction data from macromolecules
    Furey, W
    Swaminathan, S
    [J]. MACROMOLECULAR CRYSTALLOGRAPHY, PT B, 1997, 277 : 590 - +