Modeling solvation effects in real-space and real-time within density functional approaches

被引:10
作者
Delgado, Alain [1 ,2 ]
Corni, Stefano [1 ]
Pittalis, Stefano [1 ]
Rozzi, Carlo Andrea [1 ]
机构
[1] CNR, Ist Nanosci, I-41125 Modena, Italy
[2] Ctr Aplicac Tecnol & Desarrollo Nucl, Havana 11300, Cuba
关键词
POLARIZABLE CONTINUUM MODEL; AB-INITIO; IONIC-SOLUTIONS; FREE-ENERGY; CHEMISTRY; DYNAMICS; IMPLEMENTATION; POTENTIALS; SEPARATION; MOLECULES;
D O I
10.1063/1.4932593
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The Polarizable Continuum Model (PCM) can be used in conjunction with Density Functional Theory (DFT) and its time-dependent extension (TDDFT) to simulate the electronic and optical properties of molecules and nanoparticles immersed in a dielectric environment, typically liquid solvents. In this contribution, we develop a methodology to account for solvation effects in real-space (and real-time) (TD) DFT calculations. The boundary elements method is used to calculate the solvent reaction potential in terms of the apparent charges that spread over the van der Waals solute surface. In a real-space representation, this potential may exhibit a Coulomb singularity at grid points that are close to the cavity surface. We propose a simple approach to regularize such singularity by using a set of spherical Gaussian functions to distribute the apparent charges. We have implemented the proposed method in the OCTOPUS code and present results for the solvation free energies and solvatochromic shifts for a representative set of organic molecules in water. (C) 2015 AIP Publishing LLC.
引用
收藏
页数:9
相关论文
共 56 条
[1]   Separation of the electric polarization into fast and slow components: A comparison of two partition schemes [J].
Aguilar, MA .
JOURNAL OF PHYSICAL CHEMISTRY A, 2001, 105 (45) :10393-10396
[2]   Time-dependent density-functional theory in massively parallel computer architectures: the OCTOPUS project [J].
Andrade, Xavier ;
Alberdi-Rodriguez, Joseba ;
Strubbe, David A. ;
Oliveira, Micael J. T. ;
Nogueira, Fernando ;
Castro, Alberto ;
Muguerza, Javier ;
Arruabarrena, Agustin ;
Louie, Steven G. ;
Aspuru-Guzik, Alan ;
Rubio, Angel ;
Marques, Miguel A. L. .
JOURNAL OF PHYSICS-CONDENSED MATTER, 2012, 24 (23)
[3]   Modified Ehrenfest Formalism for Efficient Large-Scale ab initio Molecular Dynamics [J].
Andrade, Xavier ;
Castro, Alberto ;
Zueco, David ;
Alonso, J. L. ;
Echenique, Pablo ;
Falceto, Fernando ;
Rubio, Angel .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2009, 5 (04) :728-742
[4]   Revised self-consistent continuum solvation in electronic-structure calculations [J].
Andreussi, Oliviero ;
Dabo, Ismaila ;
Marzari, Nicola .
JOURNAL OF CHEMICAL PHYSICS, 2012, 136 (06)
[5]  
[Anonymous], 2002, HDB CHEM PHYS, V83
[6]  
[Anonymous], 2010, Solvation Effects on Molecules and Biomolecules: Computational Methods and Applications
[7]  
Baker G. A., 1996, PADE APPROXIMANTS, V59
[8]   Electronic excitation energies of molecules in solution: State specific and linear response methods for nonequilibrium continuum solvation models [J].
Cammi, R ;
Corni, S ;
Mennucci, B ;
Tomasi, J .
JOURNAL OF CHEMICAL PHYSICS, 2005, 122 (10)
[9]   New applications of integral equations methods for solvation continuum models: ionic solutions and liquid crystals [J].
Cances, E ;
Mennucci, B .
JOURNAL OF MATHEMATICAL CHEMISTRY, 1998, 23 (3-4) :309-326
[10]   A new integral equation formalism for the polarizable continuum model: Theoretical background and applications to isotropic and anisotropic dielectrics [J].
Cances, E ;
Mennucci, B ;
Tomasi, J .
JOURNAL OF CHEMICAL PHYSICS, 1997, 107 (08) :3032-3041