DNA FROM HUMAN ANCIENT BACTERIA: A NOVEL SOURCE OF GENETIC EVIDENCE FROM ARCHAEOLOGICAL DENTAL CALCULUS

被引:32
作者
De La Fuente, C. [1 ,2 ]
Flores, S. [2 ]
Moraga, M. [1 ,2 ]
机构
[1] Univ Chile, Fac Med, Programa Genet Humana ICBM, Santiago 7, Chile
[2] Univ Chile, Dept Antropol, Santiago, Chile
关键词
ANCIENT BACTERIAL DNA; ORAL MICROBIOME; MICRO-EVOLUTION; CO-EVOLUTION; JC VIRUS; EVOLUTIONARY; BIOFILM; IDENTIFICATION; MIGRATIONS; COMMUNITY; AMERICANS; PARASITES; INSIGHTS; UTILITY;
D O I
10.1111/j.1475-4754.2012.00707.x
中图分类号
K85 [文物考古];
学科分类号
0601 ;
摘要
We report a molecular methodology to obtain and analyse ancient bacterial DNA from archaeological dental calculus. Recent and archaeological DNA samples, as old as 4000 bp, were successfully extracted and amplified with species-specific PCR primers. We propose this approach in order to: detect the presence of specific bacterial species infecting past human populations; compare the composition of ancient oral microbiomes among human populations; and analyse the genetic variability and covariation of bacteria and human host populations. Genomic analysis of bacteria from dental calculus is a promising source of evidence for palaeopathological and micro-evolutionary studies, focused either on micro-organisms or their human hosts.
引用
收藏
页码:767 / 778
页数:13
相关论文
共 63 条
[41]  
Ocampo C., 1984, REV CHILENA ANTROPOL, V4, P155
[42]  
Pap I., 1995, Bull Mem Soc Anthropol Paris, V7, P69, DOI [DOI 10.3406/BMSAP.1995.2409, 10.3406/bmsap.1995.2409]
[45]   Protein preservation and DNA retrieval from ancient tissues [J].
Poinar, HN ;
Stankiewicz, BA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (15) :8426-8431
[46]   Ancient bacterial DNA (aDNA) in dental calculus from archaeological human remains [J].
Preus, Hans R. ;
Marvik, Ole J. ;
Selvig, Knut A. ;
Bennike, Pia .
JOURNAL OF ARCHAEOLOGICAL SCIENCE, 2011, 38 (08) :1827-1831
[47]  
Rozen S, 2000, Methods Mol Biol, V132, P365
[48]   THE NEIGHBOR-JOINING METHOD - A NEW METHOD FOR RECONSTRUCTING PHYLOGENETIC TREES [J].
SAITOU, N ;
NEI, M .
MOLECULAR BIOLOGY AND EVOLUTION, 1987, 4 (04) :406-425
[49]  
Schiappacasse Virgilio., 1989, Culturas de Chile Prehistoria: Desde sus Origenes Hasta las Albores de la Conquista, P181
[50]   Helicobacter pylori evolution and phenotypic diversification in a changing host [J].
Suerbaum, Sebastian ;
Josenhans, Christine .
NATURE REVIEWS MICROBIOLOGY, 2007, 5 (06) :441-452