DNA FROM HUMAN ANCIENT BACTERIA: A NOVEL SOURCE OF GENETIC EVIDENCE FROM ARCHAEOLOGICAL DENTAL CALCULUS

被引：33

作者：

De La Fuente, C. ^{[1
,2
]}

Flores, S. ^{[2
]}

Moraga, M. ^{[1
,2
]}

机构：

[1] Univ Chile, Fac Med, Programa Genet Humana ICBM, Santiago 7, Chile

[2] Univ Chile, Dept Antropol, Santiago, Chile

来源：

ARCHAEOMETRY | 2013年 / 55卷 / 04期

关键词：

ANCIENT BACTERIAL DNA; ORAL MICROBIOME; MICRO-EVOLUTION; CO-EVOLUTION; JC VIRUS; EVOLUTIONARY; BIOFILM; IDENTIFICATION; MIGRATIONS; COMMUNITY; AMERICANS; PARASITES; INSIGHTS; UTILITY;

D O I：

10.1111/j.1475-4754.2012.00707.x

中图分类号：

K85 [文物考古];

学科分类号：

0601 ;

摘要：

We report a molecular methodology to obtain and analyse ancient bacterial DNA from archaeological dental calculus. Recent and archaeological DNA samples, as old as 4000 bp, were successfully extracted and amplified with species-specific PCR primers. We propose this approach in order to: detect the presence of specific bacterial species infecting past human populations; compare the composition of ancient oral microbiomes among human populations; and analyse the genetic variability and covariation of bacteria and human host populations. Genomic analysis of bacteria from dental calculus is a promising source of evidence for palaeopathological and micro-evolutionary studies, focused either on micro-organisms or their human hosts.

引用

页码：767 / 778

页数：13

共 63 条

[1] The Phylogeny of the Four Pan-American MtDNA Haplogroups: Implications for Evolutionary and Disease Studies [J].

Achilli, Alessandro ;

Perego, Ugo A. ;

Bravi, Claudio M. ;

Coble, Michael D. ;

Kong, Qing-Peng ;

Woodward, Scott R. ;

Salas, Antonio ;

Torroni, Antonio ;

Bandelt, Hans-Juergen .

PLOS ONE, 2008, 3 (03)

[2] Asian genotypes of JC virus in Native Americans and in a Pacific Island population: Markers of viral evolution and human migration [J].

Agostini, HT ;

Yanagihara, R ;

Davis, V ;

Ryschkewitsch, CF ;

Stoner, GL .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (26) :14542-14546

[3]

Ashford RW, 2000, J MED MICROBIOL, V49, P771, DOI 10.1099/0022-1317-49-9-771

[4] The Oral Microbiota: Living with a Permanent Guest [J].

Avila, Maria ;

Ojcius, David M. ;

Yilmaz, Oezlem .

DNA AND CELL BIOLOGY, 2009, 28 (08) :405-411

[5] Rapid coastal spread of First Americans: Novel insights from South America's Southern Cone mitochondrial genomes [J].

Bodner, Martin ;

Perego, Ugo A. ;

Huber, Gabriela ;

Fendt, Liane ;

Roeck, Alexander W. ;

Zimmermann, Bettina ;

Olivieri, Anna ;

Gomez-Carballa, Alberto ;

Lancioni, Hovirag ;

Angerhofer, Norman ;

Cecilia Bobillo, Maria ;

Corach, Daniel ;

Woodward, Scott R. ;

Salas, Antonio ;

Achilli, Alessandro ;

Torroni, Antonio ;

Bandelt, Hans-Juergen ;

Parson, Walther .

GENOME RESEARCH, 2012, 22 (05) :811-820

[6] Presence of Helicobacter pylori in a Mexican pre-Columbian mummy [J].

Castillo-Rojas, Gonzalo ;

Cerbon, Marco A. ;

Lopez-Vidal, Yolanda .

BMC MICROBIOLOGY, 2008, 8 (1)

[7] Tracking human migration patterns through the oral bacterial flora [J].

Caufield, P. W. .

CLINICAL MICROBIOLOGY AND INFECTION, 2009, 15 :37-39

[8] MOLECULAR VARIANTS OF HUMAN PAPILLOMAVIRUS TYPE-16 FROM 4 CONTINENTS SUGGEST ANCIENT PANDEMIC SPREAD OF THE VIRUS AND ITS COEVOLUTION WITH HUMANKIND [J].

CHAN, SY ;

HO, L ;

ONG, CK ;

CHOW, V ;

DRESCHER, B ;

DURST, M ;

TERMEULEN, J ;

VILLA, L ;

LUANDE, J ;

MGAYA, HN ;

BERNARD, HU .

JOURNAL OF VIROLOGY, 1992, 66 (04) :2057-2066

[9] Genomics of oral bacteria [J].

Duncan, MJ .

CRITICAL REVIEWS IN ORAL BIOLOGY & MEDICINE, 2003, 14 (03) :175-187

[10] Oral Biofilms: Emerging Concepts in Microbial Ecology [J].

Filoche, S. ;

Wong, L. ;

Sissons, C. H. .

JOURNAL OF DENTAL RESEARCH, 2010, 89 (01) :8-18

← 1 2 3 4 5 6 7 →