Characterization of the complete plastid genome of Quercus sichourensis

被引：6
|
作者：
Su, Hailun [1 ]
Yang, Yanci [1 ]
Ju, Miaomiao [1 ]
Li, Huimin [1 ]
Zhao, Guifang [1 ]
机构：
[1] Northwest Univ, Coll Life Sci, Minist Educ, Key Lab Resource Biol & Biotechnol Western China, 229 Northern Taibai Rd, Xian 710069, Shaanxi, Peoples R China
来源：
CONSERVATION GENETICS RESOURCES | 2019年 / 11卷 / 02期
基金：
中国国家自然科学基金;
关键词：
Quercus sichourensis; Critically endangered species; Plastid genome; Phylogenetic relationship; FAGACEAE;
D O I：
10.1007/s12686-017-0977-9
中图分类号：
X176 [生物多样性保护];
学科分类号：
090705 ;
摘要：
Quercus sichourensis is an endemic species in China, and is critically endangered. The complete plastid genome of Q. sichourensis was generated by Illumina pair-end sequencing in the current study. The whole plastome had a length of 160,681bp, consisting of two copies of inverted repeat regions (25,835bp), a large single copy region (90,154bp) and a small single copy region (18,857bp). The plastome encoded a total of 134 genes, comprising 86 protein-coding genes (79 PCG species), 40 tRNA genes (33 tRNA species), and 8 rRNA genes (4 rRNA species). The overall GC content of Q. sichourensis plastome is 36.9%. The maximum likelihood phylogenetic analysis based on 30 complete plastomes revealed that Q. sichourensis was strictly related to Quercus edithiae with 100% bootstrap support value.
引用
收藏
页码：129 / 131
页数：3
相关论文
共 50 条
  • [41] Complete plastid genome of Cumathamnion serrulatum (Ceramiales, Rhodophyta)
    Kim, Hocheol
    Lee, Do-Yun
    Seo, Chang Wan
    Cho, Chung Hyun
    Yoon, Hwan Su
    MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (07): : 2009 - 2011
  • [42] The complete plastid genome and phylogenetic analysis of Gracilaria spinulosa
    Liu, Tao
    Tang, Xianming
    Jia, Xuli
    Wu, Xiangyu
    Huang, Min
    Zeng, Jun
    Chen, Weizhou
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 2606 - 2607
  • [43] Characterization of the complete plastid genome of Scutellaria microviolacea (Lamiaceae), a species endemic to Yunnan Province of China
    Wang, Yong-Chao
    Zhang, Zhi-Rong
    Yan, Li-Jun
    MITOCHONDRIAL DNA PART B-RESOURCES, 2022, 7 (05): : 758 - 760
  • [44] The complete chloroplast genome of Quercus fenchengensis and the phylogenetic implication
    Hu, Hua-Lei
    Wang, Lian-Zhen
    Yang, Jian
    Zhang, Ru-Song
    Li, Qun
    Liu, Yan-Qun
    Qin, Li
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 3066 - 3067
  • [45] The complete chloroplast genome sequence of Quercus myrsinifolia (Fagaceae)
    Li, Yao
    Wang, Lu
    Fang, Yanming
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 3139 - 3140
  • [46] The complete chloroplast genome sequence of Quercus stewardiana (Fagaceae)
    Li, Yao
    Wang, Lu
    Zhao, Yun
    Fang, Yanming
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (02): : 1958 - 1959
  • [47] The complete chloroplast genome sequence of Quercus chungii (Fagaceae)
    Jiang, Xiao-Long
    Mou, Hong-Lin
    Luo, Chang-Sha
    Xu, Gang-Biao
    MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (07): : 1789 - 1790
  • [48] Chromosome-scale genomes of Quercus sichourensis and Quercus rex provide insights into the evolution and adaptation of Fagaceae
    Liu, Xue
    Zhang, Weixiong
    Zhang, Yongting
    Yang, Jing
    Zeng, Peng
    Tian, Zunzhe
    Sun, Weibang
    Cai, Jing
    JOURNAL OF GENETICS AND GENOMICS, 2024, 51 (05) : 554 - 565
  • [49] The complete plastid genome sequence of Abies koreana (Pinaceae: Abietoideae)
    Yi, Dong-Keun
    Yang, Jong Cheol
    So, Soonku
    Joo, Minjung
    Kim, Dong-Kap
    Shin, Chang Ho
    Lee, You-Mi
    Choi, Kyung
    MITOCHONDRIAL DNA PART A, 2016, 27 (04) : 2351 - 2353
  • [50] Complete plastid genome of Gracilaria bailiniae (Rhodophyta) and phylogenetic analysis
    Liu, Tao
    Yang, Shouguo
    Wu, Xiangyu
    Chen, Wei Zhou
    Zhang, Jing
    Tang, Xianming
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 10 - 11
12345