Characterization of the complete plastid genome of Quercus sichourensis

被引：6
|
作者：
Su, Hailun [1 ]
Yang, Yanci [1 ]
Ju, Miaomiao [1 ]
Li, Huimin [1 ]
Zhao, Guifang [1 ]
机构：
[1] Northwest Univ, Coll Life Sci, Minist Educ, Key Lab Resource Biol & Biotechnol Western China, 229 Northern Taibai Rd, Xian 710069, Shaanxi, Peoples R China
来源：
CONSERVATION GENETICS RESOURCES | 2019年 / 11卷 / 02期
基金：
中国国家自然科学基金;
关键词：
Quercus sichourensis; Critically endangered species; Plastid genome; Phylogenetic relationship; FAGACEAE;
D O I：
10.1007/s12686-017-0977-9
中图分类号：
X176 [生物多样性保护];
学科分类号：
090705 ;
摘要：
Quercus sichourensis is an endemic species in China, and is critically endangered. The complete plastid genome of Q. sichourensis was generated by Illumina pair-end sequencing in the current study. The whole plastome had a length of 160,681bp, consisting of two copies of inverted repeat regions (25,835bp), a large single copy region (90,154bp) and a small single copy region (18,857bp). The plastome encoded a total of 134 genes, comprising 86 protein-coding genes (79 PCG species), 40 tRNA genes (33 tRNA species), and 8 rRNA genes (4 rRNA species). The overall GC content of Q. sichourensis plastome is 36.9%. The maximum likelihood phylogenetic analysis based on 30 complete plastomes revealed that Q. sichourensis was strictly related to Quercus edithiae with 100% bootstrap support value.
引用
收藏
页码：129 / 131
页数：3
相关论文
共 50 条
  • [11] Characterization of the complete plastid genome of Castanopsis hainanensis Merrill
    Chen, Xiaodan
    Yang, Jia
    Yang, Yanci
    Zhang, Xiao
    Du, Xiaomin
    Zhao, Guifang
    CONSERVATION GENETICS RESOURCES, 2018, 10 (04) : 825 - 828
  • [12] Characterization of the complete plastid genome sequence of Allium Fasciculatum
    Li, Hao
    Xie, Deng-Feng
    Zhou, Song-Dong
    He, Xing-Jin
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 1782 - 1783
  • [13] Characterization of the complete plastid genome of Castanopsis hainanensis Merrill
    Xiaodan Chen
    Jia Yang
    Yanci Yang
    Xiao Zhang
    Xiaomin Du
    Guifang Zhao
    Conservation Genetics Resources, 2018, 10 : 825 - 828
  • [14] Characterization of the complete plastid genome of Gaultheria griffithiana (Ericaceae)
    Li, Yi-Rong
    Xu, Yan-Ling
    Du, Xin-Yu
    Yang, Shu-Da
    Lu, Lu
    MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (05): : 1575 - 1577
  • [15] Characterization of the complete plastid genome of Clivia mirabilis (Amaryllidaceae)
    Yue, Ling
    Feng, Xiu-Li
    Li, Dan
    Wu, Hai-Hong
    Meng, Jing
    Zhao, Xing-Hua
    MITOCHONDRIAL DNA PART B-RESOURCES, 2025, 10 (01): : 42 - 46
  • [16] Characterization of the complete chloroplast genome of Quercus acrodonta (Fagaceae)
    Li, Xuan
    Li, Yongfu
    El-Kassaby, Yousry A.
    Fang, Yanming
    MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (12): : 3320 - 3321
  • [17] Characterization of the complete plastid genome of Lysimachia christinae Hance (Primulaceae)
    Zhang, Cai-Yun
    Yan, Hai-Fei
    Wang, Feng-Ying
    MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (01): : 268 - 270
  • [18] Characterization of the complete plastid genome sequence of the endangered species Bretschneidera sinensis
    Dong, Fengping
    Liu, Xinhong
    Zhang, Yanqin
    Lu, Ruisen
    Zheng, Zhixin
    Shen, Xin
    Li, Yingang
    CONSERVATION GENETICS RESOURCES, 2019, 11 (03) : 287 - 290
  • [19] Characterization of the complete plastid genome sequence of the endangered species Bretschneidera sinensis
    Fengping Dong
    Xinhong Liu
    Yanqin Zhang
    Ruisen Lu
    Zhixin Zheng
    Xin Shen
    Yingang Li
    Conservation Genetics Resources, 2019, 11 : 287 - 290
  • [20] Characterization of the complete plastid genome of fireweed, Epilobium angustifolium, Shaanxi, China
    Li, Yu-Li
    Tang, Shi-Yi
    Dai, Yu
    Jiang, Yu-Ting
    Li, Bao-Guo
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 4023 - 4024
12345