共 23 条
Short Synthetic Terminators for Improved Heterologous Gene Expression in Yeast
被引:171
作者:

Curran, Kathleen A.
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机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Morse, Nicholas J.
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Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Markham, Kelly A.
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机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Wagman, Allison M.
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h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Gupta, Akash
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h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Alper, Hal S.
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h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA
Univ Texas Austin, Inst Cellular & Mol Biol, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA
机构:
[1] Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA
[2] Univ Texas Austin, Inst Cellular & Mol Biol, Austin, TX 78712 USA
基金:
美国国家卫生研究院;
美国国家科学基金会;
关键词:
terminator;
3 ' UTR;
yeast;
Saccharomyces cerevisiae;
heterologous gene expression;
SACCHAROMYCES-CEREVISIAE;
MESSENGER-RNA;
PROMOTERS;
CASSETTES;
PROTEINS;
ELEMENTS;
VECTORS;
D O I:
10.1021/sb5003357
中图分类号:
Q5 [生物化学];
学科分类号:
071010 ;
081704 ;
摘要:
Terminators play an important role both in completing the transcription process and impacting mRNA half-life. As such, terminators are an important synthetic component considered in applications such as heterologous gene expression and metabolic engineering. Here, we describe a panel of short (35-70 bp) synthetic terminators that can be used for modulating gene expression in yeast. The best of these synthetic terminator resulted in 3.7-fold more fluorescent protein output and 4.4-fold increase in transcript level compared to that with the commonly used CYC1 terminator. These synthetic terminators offer several advantages over native sequences, including an easily synthesized short length, minimal sequence homology to native sequences, and similar or better performance characteristics than those of commonly used longer terminators. Furthermore, the synthetic terminators are highly functional in both Saccharomyces cerevisiae and an alternative yeast, Yarrowia lipolytica, demonstrating that these synthetic designs are transferrable between diverse yeast species.
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收藏
页码:824 / 832
页数:9
相关论文
共 23 条
[1]
Tuning genetic control through promoter engineering
[J].
Alper, H
;
Fischer, C
;
Nevoigt, E
;
Stephanopoulos, G
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2005, 102 (36)
:12678-12683

Alper, H
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Dept Chem Engn, Cambridge, MA 02139 USA

Fischer, C
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Dept Chem Engn, Cambridge, MA 02139 USA

Nevoigt, E
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Dept Chem Engn, Cambridge, MA 02139 USA

Stephanopoulos, G
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Dept Chem Engn, Cambridge, MA 02139 USA
[2]
Metabolic engineering of Saccharomyces cerevisiae for itaconic acid production
[J].
Blazeck, John
;
Miller, Jarrett
;
Pan, Anny
;
Gengler, Jon
;
Holden, Clinton
;
Jamoussi, Mariam
;
Alper, Hal S.
.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY,
2014, 98 (19)
:8155-8164

Blazeck, John
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA

Miller, Jarrett
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA

Pan, Anny
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA

Gengler, Jon
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem & Biochem, Austin, TX 78712 USA Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA

Holden, Clinton
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA

Jamoussi, Mariam
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA

Alper, Hal S.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA
Univ Texas Austin, Inst Cellular & Mol Biol, Austin, TX 78712 USA Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA
[3]
Harnessing Yarrowia lipolytica lipogenesis to create a platform for lipid and biofuel production
[J].
Blazeck, John
;
Hill, Andrew
;
Liu, Leqian
;
Knight, Rebecca
;
Miller, Jarrett
;
Pan, Anny
;
Otoupal, Peter
;
Alper, Hal S.
.
NATURE COMMUNICATIONS,
2014, 5

Blazeck, John
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA

Hill, Andrew
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA

Liu, Leqian
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA

Knight, Rebecca
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Sect Mol Cell & Dev Biol, Austin, TX 78712 USA Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA

Miller, Jarrett
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA

Pan, Anny
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA

Otoupal, Peter
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA

Alper, Hal S.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA
Univ Texas Austin, Inst Cellular & Mol Biol, Austin, TX 78712 USA Univ Texas Austin, McKetta Dept Chem Engn, Austin, TX 78712 USA
[4]
Generalizing a hybrid synthetic promoter approach in Yarrowia lipolytica
[J].
Blazeck, John
;
Reed, Ben
;
Garg, Rishi
;
Gerstner, Rachelle
;
Pan, Annie
;
Agarwala, Vaibhav
;
Alper, Hal S.
.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY,
2013, 97 (07)
:3037-3052

Blazeck, John
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Reed, Ben
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Garg, Rishi
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Gerstner, Rachelle
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Pan, Annie
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Agarwala, Vaibhav
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Alper, Hal S.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA
Univ Texas Austin, Inst Cellular & Mol Biol, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA
[5]
Controlling promoter strength and regulation in Saccharomyces cerevisiae using synthetic hybrid promoters
[J].
Blazeck, John
;
Garg, Rishi
;
Reed, Ben
;
Alper, Hal S.
.
BIOTECHNOLOGY AND BIOENGINEERING,
2012, 109 (11)
:2884-2895

Blazeck, John
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Garg, Rishi
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Reed, Ben
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Alper, Hal S.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA
Univ Texas Austin, Inst Cellular & Mol Biol, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA
[6]
Tuning Gene Expression in Yarrowia lipolytica by a Hybrid Promoter Approach
[J].
Blazeck, John
;
Liu, Leqian
;
Redden, Heidi
;
Alper, Hal
.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY,
2011, 77 (22)
:7905-7914

Blazeck, John
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Liu, Leqian
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Redden, Heidi
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Alper, Hal
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA
Univ Texas Austin, Inst Cellular & Mol Biol, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA
[7]
Design of synthetic yeast promoters via tuning of nucleosome architecture
[J].
Curran, Kathleen A.
;
Crook, Nathan C.
;
Karim, Ashty S.
;
Gupta, Akash
;
Wagman, Allison M.
;
Alper, Hal S.
.
NATURE COMMUNICATIONS,
2014, 5

Curran, Kathleen A.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Crook, Nathan C.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Karim, Ashty S.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Gupta, Akash
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Wagman, Allison M.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Alper, Hal S.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA
Univ Texas Austin, Inst Cellular & Mol Biol, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA
[8]
Use of expression-enhancing terminators in Saccharomyces cerevisiae to increase mRNA half-life and improve gene expression control for metabolic engineering applications
[J].
Curran, Kathleen A.
;
Karim, Ashty S.
;
Gupta, Akash
;
Alper, Hal S.
.
METABOLIC ENGINEERING,
2013, 19
:88-97

Curran, Kathleen A.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Karim, Ashty S.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Gupta, Akash
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA

Alper, Hal S.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA
Univ Texas Austin, Inst Cellular & Mol Biol, Austin, TX 78712 USA Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA
[9]
A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis
[J].
Fitzpatrick, David A.
;
Logue, Mary E.
;
Stajich, Jason E.
;
Butler, Geraldine
.
BMC EVOLUTIONARY BIOLOGY,
2006, 6 (1)

Fitzpatrick, David A.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Coll Dublin, Conway Inst, Sch Biomol & Biomed Sci, Dublin 4, Ireland Univ Coll Dublin, Conway Inst, Sch Biomol & Biomed Sci, Dublin 4, Ireland

Logue, Mary E.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Coll Dublin, Conway Inst, Sch Biomol & Biomed Sci, Dublin 4, Ireland

Stajich, Jason E.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Coll Dublin, Conway Inst, Sch Biomol & Biomed Sci, Dublin 4, Ireland

Butler, Geraldine
论文数: 0 引用数: 0
h-index: 0
机构: Univ Coll Dublin, Conway Inst, Sch Biomol & Biomed Sci, Dublin 4, Ireland
[10]
Global Analysis of mRNA Isoform Half-Lives Reveals Stabilizing and Destabilizing Elements in Yeast
[J].
Geisberg, Joseph V.
;
Moqtaderi, Zarmik
;
Fan, Xiaochun
;
Ozsolak, Fatih
;
Struhl, Kevin
.
CELL,
2014, 156 (04)
:812-824

Geisberg, Joseph V.
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA

Moqtaderi, Zarmik
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA

Fan, Xiaochun
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA

Ozsolak, Fatih
论文数: 0 引用数: 0
h-index: 0
机构:
Helicos BioSci Corp, Cambridge, MA 02139 USA Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA

Struhl, Kevin
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA