Short Synthetic Terminators for Improved Heterologous Gene Expression in Yeast

被引:171
作者
Curran, Kathleen A. [1 ]
Morse, Nicholas J. [1 ]
Markham, Kelly A. [1 ]
Wagman, Allison M. [1 ]
Gupta, Akash [1 ]
Alper, Hal S. [1 ,2 ]
机构
[1] Univ Texas Austin, Dept Chem Engn, Austin, TX 78712 USA
[2] Univ Texas Austin, Inst Cellular & Mol Biol, Austin, TX 78712 USA
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
terminator; 3 ' UTR; yeast; Saccharomyces cerevisiae; heterologous gene expression; SACCHAROMYCES-CEREVISIAE; MESSENGER-RNA; PROMOTERS; CASSETTES; PROTEINS; ELEMENTS; VECTORS;
D O I
10.1021/sb5003357
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Terminators play an important role both in completing the transcription process and impacting mRNA half-life. As such, terminators are an important synthetic component considered in applications such as heterologous gene expression and metabolic engineering. Here, we describe a panel of short (35-70 bp) synthetic terminators that can be used for modulating gene expression in yeast. The best of these synthetic terminator resulted in 3.7-fold more fluorescent protein output and 4.4-fold increase in transcript level compared to that with the commonly used CYC1 terminator. These synthetic terminators offer several advantages over native sequences, including an easily synthesized short length, minimal sequence homology to native sequences, and similar or better performance characteristics than those of commonly used longer terminators. Furthermore, the synthetic terminators are highly functional in both Saccharomyces cerevisiae and an alternative yeast, Yarrowia lipolytica, demonstrating that these synthetic designs are transferrable between diverse yeast species.
引用
收藏
页码:824 / 832
页数:9
相关论文
共 23 条
[1]   Tuning genetic control through promoter engineering [J].
Alper, H ;
Fischer, C ;
Nevoigt, E ;
Stephanopoulos, G .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (36) :12678-12683
[2]   Metabolic engineering of Saccharomyces cerevisiae for itaconic acid production [J].
Blazeck, John ;
Miller, Jarrett ;
Pan, Anny ;
Gengler, Jon ;
Holden, Clinton ;
Jamoussi, Mariam ;
Alper, Hal S. .
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2014, 98 (19) :8155-8164
[3]   Harnessing Yarrowia lipolytica lipogenesis to create a platform for lipid and biofuel production [J].
Blazeck, John ;
Hill, Andrew ;
Liu, Leqian ;
Knight, Rebecca ;
Miller, Jarrett ;
Pan, Anny ;
Otoupal, Peter ;
Alper, Hal S. .
NATURE COMMUNICATIONS, 2014, 5
[4]   Generalizing a hybrid synthetic promoter approach in Yarrowia lipolytica [J].
Blazeck, John ;
Reed, Ben ;
Garg, Rishi ;
Gerstner, Rachelle ;
Pan, Annie ;
Agarwala, Vaibhav ;
Alper, Hal S. .
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2013, 97 (07) :3037-3052
[5]   Controlling promoter strength and regulation in Saccharomyces cerevisiae using synthetic hybrid promoters [J].
Blazeck, John ;
Garg, Rishi ;
Reed, Ben ;
Alper, Hal S. .
BIOTECHNOLOGY AND BIOENGINEERING, 2012, 109 (11) :2884-2895
[6]   Tuning Gene Expression in Yarrowia lipolytica by a Hybrid Promoter Approach [J].
Blazeck, John ;
Liu, Leqian ;
Redden, Heidi ;
Alper, Hal .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2011, 77 (22) :7905-7914
[7]   Design of synthetic yeast promoters via tuning of nucleosome architecture [J].
Curran, Kathleen A. ;
Crook, Nathan C. ;
Karim, Ashty S. ;
Gupta, Akash ;
Wagman, Allison M. ;
Alper, Hal S. .
NATURE COMMUNICATIONS, 2014, 5
[8]   Use of expression-enhancing terminators in Saccharomyces cerevisiae to increase mRNA half-life and improve gene expression control for metabolic engineering applications [J].
Curran, Kathleen A. ;
Karim, Ashty S. ;
Gupta, Akash ;
Alper, Hal S. .
METABOLIC ENGINEERING, 2013, 19 :88-97
[9]   A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis [J].
Fitzpatrick, David A. ;
Logue, Mary E. ;
Stajich, Jason E. ;
Butler, Geraldine .
BMC EVOLUTIONARY BIOLOGY, 2006, 6 (1)
[10]   Global Analysis of mRNA Isoform Half-Lives Reveals Stabilizing and Destabilizing Elements in Yeast [J].
Geisberg, Joseph V. ;
Moqtaderi, Zarmik ;
Fan, Xiaochun ;
Ozsolak, Fatih ;
Struhl, Kevin .
CELL, 2014, 156 (04) :812-824