Multiple conformational selection and induced fit events take place in allosteric propagation

被引:94
作者
Nussinov, Ruth [1 ,2 ]
Ma, Buyong [1 ]
Tsai, Chung-Jung [1 ]
机构
[1] NCI, Leidos Biomed Res Inc, Frederick Natl Lab, Canc & Inflammat Program, Frederick, MD 21702 USA
[2] Tel Aviv Univ, Sackler Inst Mol Med, Dept Human Genet & Mol Med, Sackler Sch Med, IL-69978 Tel Aviv, Israel
基金
美国国家卫生研究院;
关键词
Conformational selection; Induced fit; Allostery; Allosteric; Binding; Molecular recognition; CELL-RECEPTOR ZETA; POPULATION-SHIFT; MOLECULAR RECOGNITION; BINDING CASCADES; FOLDING FUNNELS; DOMAIN; PROTEINS; DNA; MODULATION; ACTIVATION;
D O I
10.1016/j.bpc.2013.10.002
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The fact that we observe a single conformational selection event during binding does not necessarily mean that only a single conformational selection event takes place, even though this is the common assumption. Here we suggest that conformational selection takes place not once in a given binding/allosteric event, but at every step along the allosteric pathway. This view generalizes conformational selection and makes it applicable also to other allosteric events, such as post-translational modifications (PTMs) and photon absorption. Similar to binding, at each step along a propagation pathway, conformational selection is coupled with induced fit which optimizes the interactions. Thus, as in binding, the allosteric effects induced by PTMs and light relate not only to population shift; but to conformational selection as well. Conformational selection and population shift take place conjointly. (c) 2013 Elsevier B.V. All rights reserved.
引用
收藏
页码:22 / 30
页数:9
相关论文
共 110 条
[71]   How do dynamic cellular signals travel long distances? [J].
Nussinov, Ruth .
MOLECULAR BIOSYSTEMS, 2012, 8 (01) :22-26
[72]   Allo-network drugs: harnessing allostery in cellular networks [J].
Nussinov, Ruth ;
Tsai, Chung-Jung ;
Csermely, Peter .
TRENDS IN PHARMACOLOGICAL SCIENCES, 2011, 32 (12) :686-693
[73]   Mechanisms of transcription factor selectivity [J].
Pan, Yongping ;
Tsai, Chung-Jung ;
Ma, Buyong ;
Nussinov, Ruth .
TRENDS IN GENETICS, 2010, 26 (02) :75-83
[74]   How do transcription factors select specific binding sites in the genome? [J].
Pan, Yongping ;
Tsai, Chung-Jung ;
Ma, Buyong ;
Nussinov, Ruth .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2009, 16 (11) :1118-1120
[75]   Lipid binding by the Unique and SH3 domains of c-Src suggests a new regulatory mechanism [J].
Perez, Yolanda ;
Maffei, Mariano ;
Igea, Ana ;
Amata, Irene ;
Gairi, Margarida ;
Nebreda, Angel R. ;
Bernado, Pau ;
Pons, Miquel .
SCIENTIFIC REPORTS, 2013, 3
[76]   Ubiquitin Dynamics in Complexes Reveal Molecular Recognition Mechanisms Beyond Induced Fit and Conformational Selection [J].
Peters, Jan H. ;
de Groot, Bert L. .
PLOS COMPUTATIONAL BIOLOGY, 2012, 8 (10)
[77]   Conformational selection in trypsin-like proteases [J].
Pozzi, Nicola ;
Vogt, Austin D. ;
Gohara, David W. ;
Di Cera, Enrico .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2012, 22 (04) :421-431
[78]   Allosteric modulation of the cannabinoid CB1 receptor [J].
Price, MR ;
Baillie, GL ;
Thomas, A ;
Stevenson, LA ;
Easson, M ;
Goodwin, R ;
McLean, A ;
McIntosh, L ;
Goodwin, G ;
Walker, G ;
Westwood, P ;
Marrs, J ;
Thomson, F ;
Cowley, P ;
Christopoulos, A ;
Pertwee, RG ;
Ross, RA .
MOLECULAR PHARMACOLOGY, 2005, 68 (05) :1484-1495
[79]   Rational Design of Allosteric Inhibitors and Activators Using the Population-Shift Model: In Vitro Validation and Application to an Artificial Biosensor [J].
Ricci, Francesco ;
Vallee-Belisle, Alexis ;
Porchetta, Alessandro ;
Plaxco, Kevin W. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2012, 134 (37) :15177-15180
[80]   High-Precision, In Vitro Validation of the Sequestration Mechanism for Generating Ultrasensitive Dose-Response Curves in Regulatory Networks [J].
Ricci, Francesco ;
Vallee-Belisle, Alexis ;
Plaxco, Kevin W. .
PLOS COMPUTATIONAL BIOLOGY, 2011, 7 (10)