Multiple conformational selection and induced fit events take place in allosteric propagation

被引:94
作者
Nussinov, Ruth [1 ,2 ]
Ma, Buyong [1 ]
Tsai, Chung-Jung [1 ]
机构
[1] NCI, Leidos Biomed Res Inc, Frederick Natl Lab, Canc & Inflammat Program, Frederick, MD 21702 USA
[2] Tel Aviv Univ, Sackler Inst Mol Med, Dept Human Genet & Mol Med, Sackler Sch Med, IL-69978 Tel Aviv, Israel
基金
美国国家卫生研究院;
关键词
Conformational selection; Induced fit; Allostery; Allosteric; Binding; Molecular recognition; CELL-RECEPTOR ZETA; POPULATION-SHIFT; MOLECULAR RECOGNITION; BINDING CASCADES; FOLDING FUNNELS; DOMAIN; PROTEINS; DNA; MODULATION; ACTIVATION;
D O I
10.1016/j.bpc.2013.10.002
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The fact that we observe a single conformational selection event during binding does not necessarily mean that only a single conformational selection event takes place, even though this is the common assumption. Here we suggest that conformational selection takes place not once in a given binding/allosteric event, but at every step along the allosteric pathway. This view generalizes conformational selection and makes it applicable also to other allosteric events, such as post-translational modifications (PTMs) and photon absorption. Similar to binding, at each step along a propagation pathway, conformational selection is coupled with induced fit which optimizes the interactions. Thus, as in binding, the allosteric effects induced by PTMs and light relate not only to population shift; but to conformational selection as well. Conformational selection and population shift take place conjointly. (c) 2013 Elsevier B.V. All rights reserved.
引用
收藏
页码:22 / 30
页数:9
相关论文
共 110 条
[1]  
Aivazian D, 2000, NAT STRUCT BIOL, V7, P1023
[2]   MDA5 assembles into a polar helical filament on dsRNA [J].
Berke, Ian C. ;
Yu, Xiong ;
Modis, Yorgo ;
Egelman, Edward H. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (45) :18437-18441
[3]   During Transitions Proteins Make Fleeting Bonds [J].
Boehr, David D. .
CELL, 2009, 139 (06) :1049-1051
[4]   The role of dynamic conformational ensembles in biomolecular recognition [J].
Boehr, David D. ;
Nussinov, Ruth ;
Wright, Peter E. .
NATURE CHEMICAL BIOLOGY, 2009, 5 (11) :789-796
[5]  
Bosshard HR, 2001, NEWS PHYSIOL SCI, V16, P171
[6]   Raf Inhibitors Target Ras Spatiotemporal Dynamics [J].
Cho, Kwang-jin ;
Kasai, Rinshi S. ;
Park, Jin-Hee ;
Chigurupati, Sravanthi ;
Heidorn, Sonja J. ;
van der Hoeven, Dharini ;
Plowman, Sarah J. ;
Kusumi, Akihiro ;
Marais, Richard ;
Hancock, John F. .
CURRENT BIOLOGY, 2012, 22 (11) :945-955
[7]   Investigating Allostery in Molecular Recognition: Insights from a Computational Study of Multiple Antibody-Antigen Complexes [J].
Corrada, Dario ;
Morra, Giulia ;
Colombo, Giorgio .
JOURNAL OF PHYSICAL CHEMISTRY B, 2013, 117 (02) :535-552
[8]   Induced fit, conformational selection and independent dynamic segments: an extended view of binding events [J].
Csermely, Peter ;
Palotai, Robin ;
Nussinov, Ruth .
TRENDS IN BIOCHEMICAL SCIENCES, 2010, 35 (10) :539-546
[9]   Allostery and cooperativity revisited [J].
Cui, Qiang ;
Karplus, Martin .
PROTEIN SCIENCE, 2008, 17 (08) :1295-1307
[10]   The Origin of Allosteric Functional Modulation: Multiple Pre-existing Pathways [J].
del Sol, Antonio ;
Tsai, Chung-Jung ;
Ma, Buyong ;
Nussinov, Ruth .
STRUCTURE, 2009, 17 (08) :1042-1050