Systematic Review of Prognostic Gene Signature in Gastric Cancer Patients

被引:12
作者
Xie, Longxiang [1 ]
Cai, Linghao [1 ]
Wang, Fei [1 ]
Zhang, Lu [1 ]
Wang, Qiang [1 ]
Guo, Xiangqian [1 ]
机构
[1] Henan Univ, Sch Basic Med Sci,Sch Software, Dept Prevent Med,Inst Biomed Informat,Bioinformat, Cell Signal Transduct Lab,Henan Prov Engn Ctr Tum, Kaifeng, Peoples R China
基金
中国国家自然科学基金; 中国博士后科学基金;
关键词
gene signature; gastric cancer; overall survival; prognostic biomarker; TCGA; GEO; GROWTH-FACTOR RECEPTOR; EXPRESSION PROFILE; RISK SCORE; IDENTIFICATION; SURVIVAL; STATISTICS; VALIDATION; PREDICTION;
D O I
10.3389/fbioe.2020.00805
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Gastric cancer (GC) is the second leading cause of cancer mortality and remains the fourth common cancer worldwide. The effective and feasible methods for predicting the possible outcomes for GC patients are still lacking. While genetic profiling might be suitable in some way, the application of gene expression signatures has been show to be a robust tool. Here, by performing a comprehensive search in PubMed, we provided an up-to-date summary of 39 prognostic gene signatures for GC patients, and described the processing procedure of the selection, calculation and construction of gene signature. We also reviewed current web tools including PROGgene and SurvExpress that can be used to analyze the prognostic value of multiple genes for GC. This review will aid in comprehensive understanding of the current prognostic gene signatures to accurately predict the outcome of GC patients, and may guide the future clinical management when the reliability of these signatures is validated in clinics.
引用
收藏
页数:12
相关论文
共 50 条
  • [41] Identification of an 11-Autophagy-Related-Gene Signature as Promising Prognostic Biomarker for Bladder Cancer Patients
    Zhou, Chaoting
    Li, Alex Heng
    Liu, Shan
    Sun, Hong
    BIOLOGY-BASEL, 2021, 10 (05):
  • [42] Development and validation of a prognostic 9-gene signature for colorectal cancer
    Cui, Junpeng
    Guo, Fangyu
    Yu, Yifan
    Ma, Zihuan
    Hong, Yuting
    Su, Junyan
    Ge, Yang
    FRONTIERS IN ONCOLOGY, 2022, 12
  • [43] Prognostic Models for Predicting Overall Survival in Patients with Primary Gastric Cancer: A Systematic Review
    Feng, Qi
    May, Margaret T.
    Ingle, Suzanne
    Lu, Ming
    Yang, Zuyao
    Tang, Jinling
    BIOMED RESEARCH INTERNATIONAL, 2019, 2019
  • [44] Identification of novel antioxidant gene signature to predict the prognosis of patients with gastric cancer
    Wu, Jianhua
    Wang, Xuan
    Wang, Nan
    Ma, Li
    Xie, Xin
    Zhang, Hao
    Kang, Huafeng
    Zhou, Zhangjian
    WORLD JOURNAL OF SURGICAL ONCOLOGY, 2021, 19 (01)
  • [45] Identification of novel antioxidant gene signature to predict the prognosis of patients with gastric cancer
    Jianhua Wu
    Xuan Wang
    Nan Wang
    Li Ma
    Xin Xie
    Hao Zhang
    Huafeng Kang
    Zhangjian Zhou
    World Journal of Surgical Oncology, 19
  • [46] A nine-gene signature as prognostic biomarker in gastric cancer by bioinformatics analysis
    Guan Wang
    Zhijian Ren
    Yang Zhao
    Yumin Li
    Clinical and Translational Oncology, 2023, 25 : 3296 - 3306
  • [47] A nine-gene signature as prognostic biomarker in gastric cancer by bioinformatics analysis
    Wang, Guan
    Ren, Zhijian
    Zhao, Yang
    Li, Yumin
    CLINICAL & TRANSLATIONAL ONCOLOGY, 2023, 25 (11) : 3296 - 3306
  • [48] Development and validation of a prognostic and predictive 32-gene signature for gastric cancer
    Cheong, Jae-Ho
    Wang, Sam C.
    Park, Sunho
    Porembka, Matthew R.
    Christie, Alana L.
    Kim, Hyunki
    Kim, Hyo Song
    Zhu, Hong
    Hyung, Woo Jin
    Noh, Sung Hoon
    Hu, Bo
    Hong, Changjin
    Karalis, John D.
    Kim, In-Ho
    Lee, Sung Hak
    Hwang, Tae Hyun
    NATURE COMMUNICATIONS, 2022, 13 (01)
  • [49] Gene Expression Signature-Based Prognostic Risk Score in Gastric Cancer
    Cho, Jae Yong
    Lim, Jae Yun
    Cheong, Jae Ho
    Park, Yun-Yong
    Yoon, Se-Lyun
    Kim, Soo Mi
    Kim, Sang-Bae
    Kim, Hoguen
    Hong, Soon Won
    Park, Young Nyun
    Noh, Sung Hoon
    Park, Eun Sung
    Chu, In-Sun
    Hong, Waun Ki
    Ajani, Jaffer A.
    Lee, Ju-Seog
    CLINICAL CANCER RESEARCH, 2011, 17 (07) : 1850 - 1857
  • [50] An immune-related gene signature predicts prognosis of gastric cancer
    Jiang, Bitao
    Sun, Qingsen
    Tong, Yao
    Wang, Yuzhuo
    Ma, Haifen
    Xia, Xuefei
    Zhou, Yu
    Zhang, Xingguo
    Gao, Feng
    Shu, Peng
    MEDICINE, 2019, 98 (27)