Systematic Review of Prognostic Gene Signature in Gastric Cancer Patients

被引:12
|
作者
Xie, Longxiang [1 ]
Cai, Linghao [1 ]
Wang, Fei [1 ]
Zhang, Lu [1 ]
Wang, Qiang [1 ]
Guo, Xiangqian [1 ]
机构
[1] Henan Univ, Sch Basic Med Sci,Sch Software, Dept Prevent Med,Inst Biomed Informat,Bioinformat, Cell Signal Transduct Lab,Henan Prov Engn Ctr Tum, Kaifeng, Peoples R China
基金
中国博士后科学基金; 中国国家自然科学基金;
关键词
gene signature; gastric cancer; overall survival; prognostic biomarker; TCGA; GEO; GROWTH-FACTOR RECEPTOR; EXPRESSION PROFILE; RISK SCORE; IDENTIFICATION; SURVIVAL; STATISTICS; VALIDATION; PREDICTION;
D O I
10.3389/fbioe.2020.00805
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Gastric cancer (GC) is the second leading cause of cancer mortality and remains the fourth common cancer worldwide. The effective and feasible methods for predicting the possible outcomes for GC patients are still lacking. While genetic profiling might be suitable in some way, the application of gene expression signatures has been show to be a robust tool. Here, by performing a comprehensive search in PubMed, we provided an up-to-date summary of 39 prognostic gene signatures for GC patients, and described the processing procedure of the selection, calculation and construction of gene signature. We also reviewed current web tools including PROGgene and SurvExpress that can be used to analyze the prognostic value of multiple genes for GC. This review will aid in comprehensive understanding of the current prognostic gene signatures to accurately predict the outcome of GC patients, and may guide the future clinical management when the reliability of these signatures is validated in clinics.
引用
收藏
页数:12
相关论文
共 50 条
  • [1] Systematic review and integrated analysis of prognostic gene signatures for prostate cancer patients
    An, Yang
    Lu, Wenyuan
    Li, Shijia
    Lu, Xiaoyan
    Zhang, Yuanyuan
    Han, Dongcheng
    Su, Dingyuan
    Jia, Jiaxin
    Yuan, Jiaxin
    Zhao, Binbin
    Tu, Mengjie
    Li, Xinyu
    Wang, Xiaoqing
    Fang, Na
    Ji, Shaoping
    DISCOVER ONCOLOGY, 2023, 14 (01)
  • [2] Comprehensive analysis of a novel four-lncRNA signature as a prognostic biomarker for human gastric cancer
    Miao, Yan
    Sui, Jing
    Xu, Si-Yi
    Liang, Ge-Yu
    Pu, Yue-Pu
    Yin, Li-Hong
    ONCOTARGET, 2017, 8 (43) : 75007 - 75024
  • [3] A four-gene prognostic signature for predicting the overall survival of patients with lung adenocarcinoma
    Liu, Lei
    He, Huayu
    Peng, Yue
    Yang, Zhenlin
    Gao, Shugeng
    PEERJ, 2021, 9
  • [4] A prognostic gene signature for gastric cancer and the immune infiltration-associated mechanism underlying the signature gene, PLG
    Shi, Hui
    Duan, Jiangling
    Chen, Zhangming
    Huang, Mengqi
    Han, Wenxiu
    Kong, Rui
    Guan, Xiuyin
    Qi, Zhen
    Zheng, Shuang
    Lu, Ming
    CLINICAL & TRANSLATIONAL ONCOLOGY, 2023, 25 (04) : 995 - 1010
  • [5] Immunogenomic Landscape and Immune-Related Gene-Based Prognostic Signature in Asian Gastric Cancer
    Mao, Chenchen
    Ma, Liangliang
    Huang, Yingpeng
    Yang, Xinxin
    Huang, He
    Cai, Wentao
    Sitrakiniaina, Andriamifehimanjaka
    Gu, Ruihong
    Xue, Xiangyang
    Shen, Xian
    FRONTIERS IN ONCOLOGY, 2021, 11
  • [6] Identification of a 5-gene signature for clinical and prognostic prediction in gastric cancer patients upon microarray data
    Wang, Zhigang
    Yan, Zhi
    Zhang, Bicheng
    Rao, Zhiguo
    Zhang, Yafei
    Liu, Jian
    Yu, Lifang
    Zhao, Yong
    Yang, Bo
    Wu, Tingting
    Gao, Jianfei
    MEDICAL ONCOLOGY, 2013, 30 (03)
  • [7] Identification of a prognostic 5-Gene expression signature for gastric cancer
    Hou, Jun-Yi
    Wang, Yu-Gang
    Ma, Shi-Jie
    Yang, Bing-Yin
    Li, Qian-Ping
    JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY, 2017, 143 (04) : 619 - 629
  • [8] Construction of a Six-Gene Prognostic Signature Associated with Notch Signaling Pathway in Gastric Cancer
    Zhu, Yongjun
    Zou, Bingbing
    Wu, Mingyi
    He, Jing
    JOURNAL OF BIOLOGICAL REGULATORS AND HOMEOSTATIC AGENTS, 2023, 37 (01) : 75 - 88
  • [9] Eight-gene prognostic signature associated with hypoxia and ferroptosis for gastric cancer with general applicability
    Huo, Junyu
    Wu, Liqun
    Zang, Yunjin
    EPIGENOMICS, 2021, 13 (11) : 875 - 890
  • [10] Systematic review and integrated analysis of prognostic gene signatures for prostate cancer patients
    Yang An
    Wenyuan Lu
    Shijia Li
    Xiaoyan Lu
    Yuanyuan Zhang
    Dongcheng Han
    Dingyuan Su
    Jiaxin Jia
    Jiaxin Yuan
    Binbin Zhao
    Mengjie Tu
    Xinyu Li
    Xiaoqing Wang
    Na Fang
    Shaoping Ji
    Discover Oncology, 14