DNA in a Dissipative Environment: A Charge Transfer Approach

被引:3
|
作者
Behnia, Sohrab [1 ]
Fathizadeh, Samira [1 ]
Akhshani, Afshin [1 ]
机构
[1] Urmia Univ Technol, Dept Phys, Orumiyeh, Iran
关键词
MOLECULAR-DYNAMICS SIMULATIONS; NOSE-HOOVER THERMOSTAT; ELECTRON-TRANSFER; BLOCH OSCILLATIONS; CANONICAL DYNAMICS; DOUBLE HELIX; TEMPERATURE; TRANSPORT; MODEL; DENATURATION;
D O I
10.7566/JPSJ.84.084002
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Conductivity properties of DNA molecule is investigated in a simple, chemically specific approach, that is intimately related to the Su-Schrieffer-Heeger (SSH) model. In the SSH model, the non-diagonal matrix element dependent on intersite displacements is considered and there is a coupling between the charge and lattice deformation along DNA helix. In order to study the evolution of the electrical current flowing through DNA in the presence of external electrical field, the electrical current is directly extracted from the dynamical equations. Ranges of electrical field and hopping constant value are estimated using MLE approach. The model is studied by means of I-V characteristic diagrams and the environmental effects is conducted through a phonon bath using different lengths of DNA. The NDR and quasi-Ohmic regions are observed.
引用
收藏
页数:7
相关论文
共 50 条
  • [31] Quantum Plasmonics: Optical Monitoring of DNA-Mediated Charge Transfer in Plasmon Rulers
    Lerch, Sarah
    Reinhard, Bjoern M.
    ADVANCED MATERIALS, 2016, 28 (10) : 2030 - +
  • [32] New Approach to Knowledge Transfer Environment Development
    Hurt, Ulrika
    Otto, Tauno
    Kaare, Kati Korbe
    Koppel, Ott
    24TH DAAAM INTERNATIONAL SYMPOSIUM ON INTELLIGENT MANUFACTURING AND AUTOMATION, 2013, 2014, 69 : 273 - 281
  • [33] RADAMOL tool: Role of radiation quality and charge transfer in damage distribution along DNA oligomer
    Stepan, Vaclav
    Davidkova, Marie
    EUROPEAN PHYSICAL JOURNAL D, 2014, 68 (08)
  • [34] Quantum mechanical calculations related to ionization and charge transfer in DNA
    Cauet, E.
    Valiev, M.
    Weare, J. H.
    Lievin, J.
    1ST NANO-IBCT CONFERENCE 2011 - RADIATION DAMAGE OF BIOMOLECULAR SYSTEMS: NANOSCALE INSIGHTS INTO ION BEAM CANCER THERAPY, 2012, 373
  • [35] Four-channel model: An assessment of charge transfer via the backbone in B-DNA
    Kordas, Athanasios
    Morphis, Andreas
    Simserides, Constantinos
    PHYSICAL REVIEW E, 2025, 111 (02)
  • [36] Concepts on charge transfer through naturally vibrating DNA molecule
    Abdalla, S.
    Marzouki, F.
    GENE, 2012, 509 (01) : 24 - 37
  • [37] Charge transfer through DNA/DNA duplexes and DNA/RNA hybrids: Complex theoretical and experimental studies
    Kratochvilova, Irena
    Vala, Martin
    Weiter, Martin
    Sperova, Miroslava
    Schneider, Bohdan
    Pav, Ondrej
    Sebera, Jakub
    Rosenberg, Ivan
    Sychrovsky, Vladimir
    BIOPHYSICAL CHEMISTRY, 2013, 180 : 127 - 134
  • [38] Coarse-Grained Time-Dependent Density Functional Simulation of Charge Transfer in Complex Systems: Application to Hole Transfer in DNA
    Kubar, Tomas
    Elstner, Marcus
    JOURNAL OF PHYSICAL CHEMISTRY B, 2010, 114 (34) : 11221 - 11240
  • [39] Electrochemical Charge Transfer Through the Supramolecular Discogen-DNA Hybrid Multi-layered Assembly
    Pandey, Rakesh K.
    Pandey, Himani
    Nayak, Alpana
    CHEMISTRYSELECT, 2018, 3 (21): : 5874 - 5882
  • [40] Discrete Charge Patterns in a Holstein-SSH DNA Lattice
    Dang, Adamou Koko
    Tabi, Conrad Bertrand
    Fouda, Henri Paul Ekobena
    Kofane, Timoleon Crepin
    INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2015, 115 (01) : 34 - 41