Identification of intramolecular hydrogen bonds as the origin of malfunctioning of multitopic receptors

被引:99
作者
Dolensky, Bohumil [1 ]
Konvalinka, Roman [1 ]
Jakubek, Milan [1 ]
Kral, Vladimir [1 ]
机构
[1] Inst Chem Technol, Dept Analyt Chem, CR-16628 Prague, Czech Republic
关键词
Hydrogen bond; Intramolecular interaction; Spectral identification; H-1 NMR temperature coefficients; CHEMICAL-SHIFTS; TEMPERATURE COEFFICIENTS; MOLECULAR RECOGNITION; AMIDE; PROTON; NMR; DEPENDENCE;
D O I
10.1016/j.molstruc.2012.09.040
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Several trisamides of N,N-bis(2-aminoethyl)ethane-1,2-amine are prepared as potential saccharide receptors. Surprisingly low or even nil affinity to n-octyl-glucose is found by H-1 NMR titration, and explained as a consequence of intramolecular hydrogen bonds of trisamides, (R-CO-NH-C2H4)(3)N. The hydrogen bonds are identified by combination of H-1 NMR and infrared spectra, and H-1 NMR temperature coefficients. Results demonstrate that even small molecule can has a rather strong secondary structure, which can cause their malfunctioning in certain applications. Results also point out that the amide temperature coefficients should not be used as the only parameter for the consideration a hydrogen bond is intermolecular or intramolecular, particularly, in the case of furcated hydrogen bonds, and in the cases were a couple of signals are averaged. (c) 2012 Published by Elsevier B.V.
引用
收藏
页码:124 / 128
页数:5
相关论文
共 24 条
[1]   Synthesis and secondary structure of alternate α,β-hybrid peptides containing oxazolidin-2-one moieties [J].
Angelici, Gaetano ;
Luppi, Gianlugi ;
Kaptein, Bernard ;
Broxterman, Quirinus B. ;
Hofmann, Hans-Joerg ;
Tomasini, Claudia .
EUROPEAN JOURNAL OF ORGANIC CHEMISTRY, 2007, 2007 (16) :2713-2721
[2]   Defining the hydrogen bond: An account (IUPAC Technical Report) [J].
Arunan, Elangannan ;
Desiraju, Gautam R. ;
Klein, Roger A. ;
Sadlej, Joanna ;
Scheiner, Steve ;
Alkorta, Ibon ;
Clary, David C. ;
Crabtree, Robert H. ;
Dannenberg, Joseph J. ;
Hobza, Pavel ;
Kjaergaard, Henrik G. ;
Legon, Anthony C. ;
Mennucci, Benedetta ;
Nesbitt, David J. .
PURE AND APPLIED CHEMISTRY, 2011, 83 (08) :1619-1636
[3]   Temperature dependence of H-1 chemical shifts in proteins [J].
Baxter, NJ ;
Williamson, MP .
JOURNAL OF BIOMOLECULAR NMR, 1997, 9 (04) :359-369
[4]   Amide proton temperature coefficients as hydrogen bond indicators in proteins [J].
Cierpicki, T ;
Otlewski, J .
JOURNAL OF BIOMOLECULAR NMR, 2001, 21 (03) :249-261
[5]   SUPRAMOLECULAR CHEMISTRY Sticking to sugars [J].
Davis, Anthony P. .
NATURE, 2010, 464 (7286) :169-170
[6]   Recognition of a dicarboxylic acid with dipicolyl urea in solution and in solid phases: intramolecular hydrogen bond inhibiting both pyridine nitrogens from binding carboxyl groups [J].
Goswami, Shyamaprosad ;
Jana, Subrata ;
Dey, Swapan ;
Sen, Debabrata ;
Fun, Hoong-Kun ;
Chantrapromma, Suchada .
TETRAHEDRON, 2008, 64 (27) :6426-6433
[7]   1H NMR studies on the hydrogen-bonding network in mono-altro-β-cyclodextrin and its complex with adamantane-1-carboxylic acid [J].
Hakkarainen, B ;
Fujita, K ;
Immel, S ;
Kenne, L ;
Sandström, C .
CARBOHYDRATE RESEARCH, 2005, 340 (08) :1539-1545
[8]   Studies on intramolecular hydrogen bonding between the pyridine nitrogen and the amide hydrogen of the peptide: synthesis and conformational analysis of tripeptides containing novel amino acids with a pyridine ring [J].
Hanyu, M ;
Ninomiya, D ;
Yanagihara, R ;
Murashima, T ;
Miyazawa, T ;
Yamada, T .
JOURNAL OF PEPTIDE SCIENCE, 2005, 11 (08) :491-498
[9]   A practical guide for the determination of binding constants [J].
Hirose, K .
JOURNAL OF INCLUSION PHENOMENA AND MACROCYCLIC CHEMISTRY, 2001, 39 (3-4) :193-209
[10]  
Hoveyda H.R., 1998, CAN J CHEM, V76, P414