A pitfall in the reconstruction of fibre ODFs using spherical deconvolution of diffusion MRI data

被引:86
|
作者
Parker, G. D. [1 ,2 ,4 ]
Marshall, D. [4 ]
Rosin, P. L. [4 ]
Drage, N. [2 ]
Richmond, S. [2 ]
Jones, D. K. [1 ,3 ]
机构
[1] Cardiff Univ, Sch Psychol, CUBRIC, Cardiff CF24 3AA, S Glam, Wales
[2] Cardiff Univ, Sch Dent, Cardiff CF24 3AA, S Glam, Wales
[3] Cardiff Univ, Neurosci & Mental Hlth Res Inst, Cardiff CF24 3AA, S Glam, Wales
[4] Cardiff Univ, Sch Comp Sci & Informat, Cardiff CF24 3AA, S Glam, Wales
基金
英国惠康基金;
关键词
Spherical harmonic deconvolution; Richardson-Lucy; MRI; Calibration; Tractography; Diffusion tensor imaging; AXON DIAMETER; TENSOR; TRACTOGRAPHY; DENSITY;
D O I
10.1016/j.neuroimage.2012.10.022
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
Diffusion weighted (DW) MRI facilitates non-invasive quantification of tissue microstructure and, in combination with appropriate signal processing, three-dimensional estimates of fibrous orientation. In recent years, attention has shifted from the diffusion tensor model, which assumes a unimodal Gaussian diffusion displacement profile to recover fibre orientation (with various well-documented limitations), towards more complex high angular resolution diffusion imaging (HARDI) analysis techniques. Spherical deconvolution (SD) approaches assume that the fibre orientation density function (fODF) within a voxel can be obtained by deconvolving a 'common' single fibre response function from the observed set of DW signals. In practice, this common response function is not known a priori and thus an estimated fibre response must be used. Here the establishment of this single-fibre response function is referred to as 'calibration'. This work examines the vulnerability of two different SD approaches to inappropriate response function calibration: (1) constrained spherical harmonic deconvolution (CSHD) a technique that exploits spherical harmonic basis sets and (2) damped Richardson-Lucy (dRL) deconvolution a technique based on the standard Richardson-Lucy deconvolution. Through simulations, the impact of a discrepancy between the calibrated diffusion profiles and the observed ('Target') OW-signals in both single and crossing-fibre configurations was investigated. The results show that CSHD produces spurious fODF peaks (consistent with well known ringing artefacts) as the discrepancy between calibration and target response increases, while dRL demonstrates a lower over-all sensitivity to miscalibration (with a calibration response function for a highly anisotropic fibre being optimal). However, dRL demonstrates a reduced ability to resolve low anisotropy crossing-fibres compared to CSHD. It is concluded that the range and spatial-distribution of expected single-fibre anisotropies within an image must be carefully considered to ensure selection of the appropriate algorithm, parameters and calibration. Failure to choose the calibration response function carefully may severely impact the quality of any resultant tractography. (C) 2012 Elsevier Inc. All rights reserved.
引用
收藏
页码:433 / 448
页数:16
相关论文
共 50 条
  • [22] Improvement in White Matter Tract Reconstruction with Constrained Spherical Deconvolution and Track Density Mapping in Low Angular Resolution Data: A Pediatric Study and Literature Review
    Toselli, Benedetta
    Tortora, Domenico
    Severino, Mariasavina
    Arnulfo, Gabriele
    Canessa, Andrea
    Morana, Giovanni
    Rossi, Andrea
    Fato, Marco Massimo
    FRONTIERS IN PEDIATRICS, 2017, 5
  • [23] Diffeomorphic Image Registration of Diffusion MRI Using Spherical Harmonics
    Geng, Xiujuan
    Ross, Thomas J.
    Gu, Hong
    Shin, Wanyong
    Zhan, Wang
    Chao, Yi-Ping
    Lin, Ching-Po
    Schuff, Norbert
    Yang, Yihong
    IEEE TRANSACTIONS ON MEDICAL IMAGING, 2011, 30 (03) : 747 - 758
  • [24] Quantitative Comparison of Spherical Deconvolution Approaches to Resolve Complex Fiber Configurations in Diffusion MRI: ISRA-Based vs L2L0 Sparse Methods
    Mastropietro, Alfonso
    Scifo, Paola
    Rizzo, Giovanna
    IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 2017, 64 (12) : 2847 - 2857
  • [25] Towards reliable reconstruction of the mouse brain corticothalamic connectivity using diffusion MRI
    Arefin, Tanzil Mahmud
    Lee, Choong Heon
    Liang, Zifei
    Rallapalli, Harikrishna
    Wadghiri, Youssef Z.
    Turnbull, Daniel H.
    Zhang, Jiangyang
    NEUROIMAGE, 2023, 273
  • [26] Non-Negative Spherical Deconvolution (NNSD) for estimation of fiber Orientation Distribution Function in single-/multi-shell diffusion MRI
    Cheng, Jian
    Deriche, Rachid
    Jiang, Tianzi
    Shen, Dinggang
    Yap, Pew-Thian
    NEUROIMAGE, 2014, 101 : 750 - 764
  • [27] Multi-Spherical Diffusion MRI: Exploring Diffusion Time Using Signal Sparsity
    Fick, Rutger H. J.
    Petiet, Alexandra
    Santin, Mathieu
    Philippe, Anne-Charlotte
    Lehericy, Stephane
    Deriche, Rachid
    Wassermann, Demian
    COMPUTATIONAL DIFFUSION MRI, 2017, : 71 - 83
  • [28] Spherical deconvolution with tissue-specific response functions and multi-shell diffusion MRI to estimate multiple fiber orientation distributions (mFODs)
    De Luca, Alberto
    Guo, Fenghua
    Froeling, Martijn
    Leemans, Alexander
    NEUROIMAGE, 2020, 222
  • [29] Tractography gone wild: Probabilistic fibre tracking using the wild bootstrap with diffusion tensor MRI
    Jones, Derek K.
    IEEE TRANSACTIONS ON MEDICAL IMAGING, 2008, 27 (09) : 1268 - 1274
  • [30] Comparison of multiple tractography methods for reconstruction of the retinogeniculate visual pathway using diffusion MRI
    He, Jianzhong
    Zhang, Fan
    Xie, Guoqiang
    Yao, Shun
    Feng, Yuanjing
    Bastos, Dhiego C. A.
    Rathi, Yogesh
    Makris, Nikos
    Kikinis, Ron
    Golby, Alexandra J.
    O'Donnell, Lauren J.
    HUMAN BRAIN MAPPING, 2021, 42 (12) : 3887 - 3904