Multi-tissue Siberian sturgeon RNA sequencing data

被引：2

作者：

Klopp, Christophe ^{[1
,2
]}

Cabau, Cedric ^{[4
]}

Lasalle, Andre ^{[3
]}

Di Landro, Santiago ^{[3
]}

Greif, Gonzalo ^{[4
]}

Vizziano-Cantonnet, Denise ^{[3
]}

机构：

[1] INRAE, SIGENAE, MIAT UR875, F-31326 Castanet Tolosan, France

[2] Univ Toulouse, SIGENAE, GenPhySE, INRAE,ENVT, F-31326 Castanet Tolosan, France

[3] Univ Republ Oriental Uruguay, Inst Biol, Fac Ciencias, Lab Fisiol Reprod & Ecol Peces, Igua 4225, Montevideo 11400, Uruguay

[4] Inst Pasteur Montevideo, Lab Interacc Hospedero Patogeno, Unidad Biol Mol, Montevideo, Uruguay

来源：

DATA IN BRIEF | 2020年 / 31卷

关键词：

Siberian sturgeon; Transcriptomics; Anterior-kidney; Kidney; Stomach; Liver; Embryos;

D O I：

10.1016/j.dib.2020.105820

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Siberian sturgeon, Acipenser baerii, is a commercially valuable fish for flesh and caviar production and a threatened species. We produced transcriptomic data for ten tissues with relevance to puberty, reproduction, early development, growth and food intake. The data includes RNA-Seq read sets of brain, pituitary, anterior-kidney, kidney, stomach, liver, heart, embryonic, pre-larval, and immature gonad sequences. Tissues were collected from sex differentiated fish (17 to 42 months of age, 66 to 85 cm) RNA was extracted and sequenced. Our purpose is to facilitate fundamental studies of sturgeon physiology to wild and aquaculture populations management. (C) 2020 The Author(s). Published by Elsevier Inc.

引用

页数：7

共 9 条

[1] Endangered migratory sturgeons of the lower Danube River and its delta [J].

BacalbasaDobrovici, N .

ENVIRONMENTAL BIOLOGY OF FISHES, 1997, 48 (1-4) :201-208

[2]

BIRSTEIN VJ, 1993, CONSERV BIOL, V7, P773, DOI 10.1046/j.1523-1739.1993.740773.x

[3] Compacting and correcting Trinity and Oases RNA - Seq de novo assemblies [J].

Cabau, Cedric ;

Escudie, Frederic ;

Djari, Anis ;

Guiguen, Yann ;

Bobe, Julien ;

Klopp, Christophe .

PEERJ, 2017, 5

[4]

Chebanov M., 2018, ASSESSMENT CHARACTER, V2, P217, DOI DOI 10.1007/978-3-319-61676

[5]

Korentovich M., 2018, SIB STURGEON, P181, DOI [10.1007/978-3-319-61676-6_12, DOI 10.1007/978-3-319-61676-6_12]

[6] BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs [J].

Simao, Felipe A. ;

Waterhouse, Robert M. ;

Ioannidis, Panagiotis ;

Kriventseva, Evgenia V. ;

Zdobnov, Evgeny M. .

BIOINFORMATICS, 2015, 31 (19) :3210-3212

[7]

SOKOLOV LI, 1989, FRESHWATER FISHES 2, V1, P263

[8]

Vizziano-Cantonnet D., 2018, SIBERIAN STURGEON, DOI [10.1007/978-3-319-61664-3_6, DOI 10.1007/978-3-319-61664-3_6]

[9] Biology, fisheries, and conservation of sturgeons and paddlefish in China [J].

Wei, QW ;

Ke, FE ;

Zhang, JM ;

Zhuang, P ;

Luo, JD ;

Zhou, RQ ;

Yang, WH .

ENVIRONMENTAL BIOLOGY OF FISHES, 1997, 48 (1-4) :241-256

← 1 →