Will a DNA barcoding approach be useful to identify Porphyra species (Bangiales, Rhodophyta)?

被引:35
作者
Milstein, Daniela [1 ]
Medeiros, Amanda S. [1 ]
Oliveira, Eurico C. [1 ,2 ]
Oliveira, Mariana C. [1 ]
机构
[1] Univ Sao Paulo, Dept Bot, Inst Biociencias, BR-05508090 Sao Paulo, Brazil
[2] Univ Fed Santa Catarina, Dept Bot, Ctr Ciencias Biol, BR-88040970 Florianopolis, SC, Brazil
基金
巴西圣保罗研究基金会;
关键词
Porphyra; Bangiales; DNA barcode; cox1; cox2-3; UPA; CRYPTIC DIVERSITY; CANADIAN WATERS; SP-NOV; REVEALS; MARKER; ALGAE; FLORIDEOPHYCEAE; PHAEOPHYCEAE; GIGARTINALES; CONCHOCELIS;
D O I
10.1007/s10811-011-9702-3
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
This paper is part of an extensive study on the biodiversity of the macroalgal flora of So Paulo state, SE Brazil. Previous assessments were based only on morphological descriptions. Here, we tested the effectiveness of DNA barcoding, in comparison with morphological observations for the recognition and cataloging of species. The focus of this study is the genus Porphyra, which is a conspicuous component of the upper intertidal on rocky shores of this region. With five currently accepted species, we have sequenced three short markers: cox1, cox2-3 spacer and UPA to establish the first DNA barcode database for the Porphyra species from the Brazilian coast. The three markers, although with different evolution rates, recovered a cryptic species (Porphyra sp. 77), grouped two different species (Porphyra drewiana and Porphyra spiralis) that are being synonymized, and finally indicated that varieties within P. acanthophora and P. spiralis are merely morphological, with no sequence divergence in the studied molecular markers.
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页码:837 / 845
页数:9
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