The arrival and spread of SARS-CoV-2 in Colombia

被引:24
作者
David Ramirez, Juan [1 ]
Florez, Carolina [2 ]
Munoz, Marina [1 ]
Hernandez, Carolina [1 ]
Castillo, Adriana [1 ]
Gomez, Sergio [2 ]
Rico, Angelica [2 ]
Pardo, Lisseth [2 ]
Barros, Esther C. [2 ]
Castaneda, Sergio [1 ]
Ballesteros, Nathalia [1 ]
Martinez, David [1 ]
Vega, Laura [1 ]
Jaimes, Jesus E. [1 ]
Cruz-Saavedra, Lissa [1 ]
Herrera, Giovanny [1 ]
Patino, Luz H. [1 ]
Teheran, Anibal A. [3 ]
Gonzalez-Reiche, Ana S. [4 ]
Hernandez, Matthew M. [4 ]
Sordillo, Emilia Mia [4 ]
Simon, Viviana [4 ]
van Bakel, Harm [4 ]
Paniz-Mondolfi, Alberto [4 ]
机构
[1] Univ Rosario, Fac Ciencias Nat, Dept Biol, Grp Invest Microbiol UR GIMUR, Bogota, Colombia
[2] Inst Nacl Salud, Bogota, Colombia
[3] Fdn Juan N Corpas, Bogota, Colombia
[4] Icahn Sch Med Mt Sinai, New York, NY 10029 USA
关键词
B; 1; Colombia; COVID-19; lineage; SARS-CoV-2;
D O I
10.1002/jmv.26393
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
We performed phylogenomic analysis of severe acute respiratory syndrome coronavirus-2 from 88 infected individuals across different regions of Colombia. Eleven different lineages were detected, suggesting multiple introduction events. Pangolin lineages B.1 and B.1.5 were the most frequent, with B.1 being associated with prior travel to high-risk areas.
引用
收藏
页码:1158 / 1163
页数:6
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