SARS-CoV-2 and COVID-19: A genetic, epidemiological, and evolutionary perspective

被引:88
作者
Sironi, Manuela [1 ]
Hasnain, Seyed E. [2 ]
Rosenthal, Benjamin [12 ]
Tung Phan [3 ,4 ]
Luciani, Fabio [5 ]
Shaw, Marie-Anne [6 ]
Anice Sallum, M. [7 ]
Mirhashemi, Marzieh Ezzaty [8 ]
Morand, Serge [9 ]
Gonzalez-Candelas, Fernando [10 ,11 ]
机构
[1] Sci Inst IRCCS E MEDEA, Bioinformat Unit, Bosisio Parini, LC, Italy
[2] Jamia Hamdard, JH Inst Mol Med, New Delhi, India
[3] Univ Pittsburgh, Div Clin Microbiol, Pittsburgh, PA USA
[4] Univ Pittsburgh, Med Ctr, Pittsburgh, PA USA
[5] Univ New South Wales, Sydney, NSW 2052, Australia
[6] Univ Leeds, Sch Med, Leeds Inst Med Res St Jamess, Leeds, W Yorkshire, England
[7] Univ Sao Paulo, Fac Saude Publ, Dept Epidemiol, Sao Paulo, Brazil
[8] Univ Massachusetts, Med Sch, Worcester, MA 01655 USA
[9] Inst Evolut Sci Montpellier, Case Courier 064, F-34095 Montpellier, France
[10] Univ Valencia, Joint Res Unit Infect & Publ Hlth FISABIO, Inst Integrat Syst Biol I2SysBio, Valencia, Spain
[11] CIBER Epidemiol & Publ Hlth, Valencia, Spain
[12] ARS, Anim Parasit Dis Lab, USDA, Beltsville, MD USA
关键词
Coronavirus; Coevolution; Host susceptibility; Immune system; Pandemics; Phylodynamics; ACUTE-RESPIRATORY-SYNDROME; CORONAVIRUS SPIKE PROTEIN; MANNOSE-BINDING LECTIN; SARS-CORONAVIRUS; ENCEPHALITIS OUTBREAK; MOLECULAR EVOLUTION; INFECTIOUS-DISEASES; IMMUNE-RESPONSES; CLASS-II; IDENTIFICATION;
D O I
10.1016/j.meegid.2020.104384
中图分类号
R51 [传染病];
学科分类号
100401 ;
摘要
In less than five months, COVID-19 has spread from a small focus in Wuhan, China, to more than 5 million people in almost every country in the world, dominating the concern of most governments and public health systems. The social and political distresses caused by this epidemic will certainly impact our world for a long time to come. Here, we synthesize lessons from a range of scientific perspectives rooted in epidemiology, virology, genetics, ecology and evolutionary biology so as to provide perspective on how this pandemic started, how it is developing, and how best we can stop it.
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页数:15
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共 144 条
  • [1] Era of molecular diagnosis for pathogen identification of unexplained pneumonia, lessons to be learned
    Ai, Jing-Wen
    Zhang, Yi
    Zhang, Hao-Cheng
    Xu, Teng
    Zhang, Wen-Hong
    [J]. EMERGING MICROBES & INFECTIONS, 2020, 9 (01) : 597 - 600
  • [2] Global hotspots and correlates of emerging zoonotic diseases
    Allen, Toph
    Murray, Kris A.
    Zambrana-Torrelio, Carlos
    Morse, Stephen S.
    Rondinini, Carlo
    Di Marco, Moreno
    Breit, Nathan
    Olival, Kevin J.
    Daszak, Peter
    [J]. NATURE COMMUNICATIONS, 2017, 8
  • [3] The proximal origin of SARS-CoV-2
    Andersen, Kristian G.
    Rambaut, Andrew
    Lipkin, W. Ian
    Holmes, Edward C.
    Garry, Robert F.
    [J]. NATURE MEDICINE, 2020, 26 (04) : 450 - 452
  • [4] Global Disease Outbreaks Associated with the 2015-2016 El Nino Event
    Anyamba, Assaf
    Chretien, Jean-Paul
    Britch, Seth C.
    Soebiyanto, Radina P.
    Small, Jennifer L.
    Jepsen, Rikke
    Forshey, Brett M.
    Sanchez, Jose L.
    Smith, Ryan D.
    Harris, Ryan
    Tucker, Compton J.
    Karesh, William B.
    Linthicum, Kenneth J.
    [J]. SCIENTIFIC REPORTS, 2019, 9 (1)
  • [5] Bedford Trevor, 2020, CRYPTIC TRANSMISSION, DOI [10.1101/2020.04.02., DOI 10.1101/2020.04.02]
  • [6] Innate immune responses in the ageing lung
    Boe, D. M.
    Boule, L. A.
    Kovacs, E. J.
    [J]. CLINICAL AND EXPERIMENTAL IMMUNOLOGY, 2017, 187 (01) : 16 - 25
  • [7] Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic
    Boni, Maciej F.
    Lemey, Philippe
    Jiang, Xiaowei
    Lam, Tommy Tsan-Yuk
    Perry, Blair W.
    Castoe, Todd A.
    Rambaut, Andrew
    Robertson, David L.
    [J]. NATURE MICROBIOLOGY, 2020, 5 (11) : 1408 - +
  • [8] Cross-species pathogen spillover across ecosystem boundaries: mechanisms and theory
    Borremans, Benny
    Faust, Christina
    Manlove, Kezia R.
    Sokolow, Susanne H.
    Lloyd-Smith, James O.
    [J]. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2019, 374 (1782)
  • [9] Genomes as documents of evolutionary history
    Boussau, Bastien
    Daubin, Vincent
    [J]. TRENDS IN ECOLOGY & EVOLUTION, 2010, 25 (04) : 224 - 232
  • [10] The Confluence of Sex Hormones and Aging on Immunity
    Bupp, Melanie R. Gubbels
    Potluri, Tanvi
    Fink, Ashley L.
    Klein, Sabra L.
    [J]. FRONTIERS IN IMMUNOLOGY, 2018, 9