Reaction Networks as Systems for Resource Allocation: A Variational Principle for Their Non-Equilibrium Steady States

被引:6
作者
De Martino, Andrea [1 ]
De Martino, Daniele
Mulet, Roberto [2 ]
Uguzzoni, Guido [3 ,4 ]
机构
[1] Univ Roma La Sapienza, Dipartimento Fis, IPCF CNR, Rome, Italy
[2] Univ Havana, Fac Phys, Dept Theoret Phys, Grp Complex Syst, Havana, Cuba
[3] Univ Parma, Dipartimento Fis, I-43100 Parma, Italy
[4] Ist Nazl Fis Nucl, Sez Parma, Parma, Italy
关键词
FLUX BALANCE ANALYSIS; ESCHERICHIA-COLI; BIOCHEMICAL NETWORKS; METABOLIC NETWORK; THERMODYNAMICS; RECONSTRUCTION; PATHWAYS; DYNAMICS;
D O I
10.1371/journal.pone.0039849
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Within a fully microscopic setting, we derive a variational principle for the non-equilibrium steady states of chemical reaction networks, valid for time-scales over which chemical potentials can be taken to be slowly varying: at stationarity the system minimizes a global function of the reaction fluxes with the form of a Hopfield Hamiltonian with Hebbian couplings, that is explicitly seen to correspond to the rate of decay of entropy production over time. Guided by this analogy, we show that reaction networks can be formally re-cast as systems of interacting reactions that optimize the use of the available compounds by competing for substrates, akin to agents competing for a limited resource in an optimal allocation problem. As an illustration, we analyze the scenario that emerges in two simple cases: that of toy (random) reaction networks and that of a metabolic network model of the human red blood cell.
引用
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页数:9
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